View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_65 (Length: 240)
Name: NF4568_low_65
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_65 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 6227311 - 6227532
Alignment:
| Q |
18 |
gttgaagtgttagaatttatcaaaacctaacataacttgacaattggacaatttacacatgctttatgtttaaagcgcgactaaccaaagaaagctatga |
117 |
Q |
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| T |
6227311 |
gttgaagtgttagaatttgtcaaaacctaacataacttgacaattgcacaatttacacatgctttatgtttaaagcgccactaaccaaagaaagctatga |
6227410 |
T |
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| Q |
118 |
gaaagaagttgtgttatgaaaaagttaagcatgaactagactaccatannnnnnnagtattgtagtgctaaatttgaaaagnnnnnnnnnctaaatttta |
217 |
Q |
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| T |
6227411 |
gaaagaagttgtgttatgaaaaagttaagtatgaactagactaccata-ttttttagtattgcagtgctaaatttgaaaagaaaaaaaaattaaatttta |
6227509 |
T |
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| Q |
218 |
atttagcaaacaaaattatcatt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
6227510 |
atttagcaaacaaaattatcatt |
6227532 |
T |
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