View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_66 (Length: 239)
Name: NF4568_low_66
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_66 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 38487456 - 38487234
Alignment:
| Q |
17 |
accaaaaaccaactagagatagtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaa |
116 |
Q |
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| T |
38487456 |
accaaaaaccaactagagatagtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaa |
38487357 |
T |
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| Q |
117 |
ttgctttcacaaaatggctacgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487356 |
ttgctttcacaaaatggctacgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacc |
38487257 |
T |
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| Q |
217 |
tccgtgcaggatagtccgcccaa |
239 |
Q |
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| T |
38487256 |
tccgtgcaggatagtccgcccaa |
38487234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 3686579 - 3686501
Alignment:
| Q |
125 |
acaaaatggctacgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctc |
203 |
Q |
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| T |
3686579 |
acaaaatggcttctagcatatagccgatagttctcagcaaaactcttgtgctccaccacaaaaccgcgacctgtggctc |
3686501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 30121849 - 30121633
Alignment:
| Q |
23 |
aaccaactagagatagtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaattgctt |
122 |
Q |
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| T |
30121849 |
aaccaactagtaatggtcagggctatataaacaaatgtgtccgttgctacaggactgtgtgttgcataaattacaagtattagccccaattcaatagctt |
30121750 |
T |
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| Q |
123 |
tcacaaaatggctacgagcatagagtctatagttttctgcaaaactcttgtgctctacaacaaaaccacgacctgtggctcgatattttgcacctccgtg |
222 |
Q |
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|||||||||||||||| | | ||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||| |
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| T |
30121749 |
tcacaaaatggctacgggaaaagagtctatagatttcggcaaaactcttgtgctctacaacaaaaccacggccggtggctcgatattttgctccaccgtg |
30121650 |
T |
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| Q |
223 |
caggatagtccgcccaa |
239 |
Q |
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||| |||||||| |||| |
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| T |
30121649 |
cagaatagtccggccaa |
30121633 |
T |
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