View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4568_low_69 (Length: 239)
Name: NF4568_low_69
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_69 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 31470922 - 31470702
Alignment:
| Q |
18 |
tcctcgtagtgttgatggtgaagaaacttgcacatcggtaaaggaatgtgacnnnnnnnnn-ccctcttagagattaagttgaattatttccttttcctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31470922 |
tcctcgtagtgttgatggtgaagaaacttgcacatcgataaaggaatgtgacttttttttttccctcttagagattaagttgaattatttccttttcctt |
31470823 |
T |
|
| Q |
117 |
aaaataaaatctgtgaatttagttcctccttaccctcggtaagtaaatgaatttgcagttatagctcacctattagaatttgcagtctttcccctta-ta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31470822 |
aaaataaaatctgtgaatttagttcctccttaccctcggtaagtaaatgaatttgcagtcatagctcacctattagaatttgcagtctttccccttacta |
31470723 |
T |
|
| Q |
216 |
cataatatgtcatgcccatgt |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31470722 |
cataatatgtcatgcccatgt |
31470702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University