View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_7 (Length: 479)
Name: NF4568_low_7
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 25381584 - 25381106
Alignment:
| Q |
1 |
aaattgctctggactttgatacgccatgggatcctcttgatctttaacatcagcactgtcctgctcagttgttgcaacctcttcctgcacattcagatta |
100 |
Q |
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| T |
25381584 |
aaattgctctggactttgatacgccatgggatcctcctgatctttaacatcagcactgtcctgctcagttgttgcaacctgttcctgcacattcagatta |
25381485 |
T |
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| Q |
101 |
caagagtcttgaatatttgtaaggtcaattagataataagaaatattacaattatgtggacttagttaaagatattctaaatctataaatgaagtggtaa |
200 |
Q |
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| T |
25381484 |
caagagtcttgaatatttgcaaggtcaattagataataagaaatattacaattatgtggatttagttaaagatattctaaatctataaatgaagtggtaa |
25381385 |
T |
|
| Q |
201 |
aaatatggcaataaaaattgactttactgtgctaggatatgtcttgaaagttgttacgtcatatgacatatacatgatcgtgaagtgttgttcccttgta |
300 |
Q |
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| T |
25381384 |
agatatggcaataaaaattgtctttactgtgctaggatatgtcttgaaagtttttacgtcatatggcatatacatgatcgtgaagtgttgttcccttgta |
25381285 |
T |
|
| Q |
301 |
taaaatggattctcaagggagcgggggaataacatctcaatcacaaatctaaataccttgcttctatattagagtttaaattacatggaagtaaatttaa |
400 |
Q |
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| T |
25381284 |
taaaatggattctcaagggagcgggggaataacatctcaatcacaaatctatataccttgcttctatattagagtttaaattacatggaagtaaatttaa |
25381185 |
T |
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| Q |
401 |
gtaacgaaggactgaaccaagtaaaagtgctaattttggttgaaagatcattatattccaaattttaactcacaaacat |
479 |
Q |
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| T |
25381184 |
gtaacgaaggactgaaccaagtaaaagtgctaattttggttgaaagatcattatgttccaaattttaactcacaaacat |
25381106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 38338647 - 38338718
Alignment:
| Q |
58 |
gtcctgctcagttgttgcaacctcttcctgcacattcagattacaagagtcttgaatatttgtaaggtcaatta |
131 |
Q |
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| T |
38338647 |
gtcctgctcagctgttgcaaccttttcctg--cattcagataacaagagttttgaaaattagcaaggtcaatta |
38338718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 38330246 - 38330295
Alignment:
| Q |
59 |
tcctgctcagttgttgcaacctcttcctgcacattcagattacaagagtctt |
110 |
Q |
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| T |
38330246 |
tcctgctcagctgttgcaacctcttcctgcac--tcagataacaagagtctt |
38330295 |
T |
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