View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_73 (Length: 227)
Name: NF4568_low_73
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_73 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 38609590 - 38609810
Alignment:
| Q |
6 |
agaatcaacaaattaaagcagtttttcaaaaatgcatacgaagacaatatcaacctgtttgtgaaatttttcgtaaagttcctctaataaaacatataag |
105 |
Q |
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| T |
38609590 |
agaatcaacaaattaaggcagtttttcaaaaatgcatacgaagacaatatcaacctgtttgtgaaatttttcgtaaagttcctctaataaaacatataag |
38609689 |
T |
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| Q |
106 |
catgtgaataaaggtaaacatcacaaaatcaattatcaatttatcatcatcctttctgaactnnnnnnnttcaaacaatgcagatgaatatcaatgacag |
205 |
Q |
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| T |
38609690 |
catgcgaataaaggtaaacatcacaagaccaattatcaatttatcatcatcctttctgaactaaaaaaattcaaa-aatgcagatgaatatcaatgacaa |
38609788 |
T |
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| Q |
206 |
ataaatgagtaaaacaagttaa |
227 |
Q |
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||||||||| |||||||||||| |
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| T |
38609789 |
ataaatgagaaaaacaagttaa |
38609810 |
T |
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