View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_75 (Length: 224)
Name: NF4568_low_75
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 23 - 215
Target Start/End: Complemental strand, 30052981 - 30052789
Alignment:
| Q |
23 |
actatagacactgaatactgattcggctctgaataacttcaaaataatttatacctaaaaaagaatcaacatagtagaatgaaatactactatctcaata |
122 |
Q |
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| T |
30052981 |
actatagacactgaatactgatccggctctgaataacttcaaaatgatttatacctgaaaaagaatgaatatagtaaaatgaaatactactatctcaatg |
30052882 |
T |
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| Q |
123 |
aattcccaaattaagataaaatatagaatgccaccttaaaacaattgctaatttaaacaacatatcaataaaatactttttctatagaataat |
215 |
Q |
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| T |
30052881 |
agttctcaaattaagataaaatatagaacgccaccttaaaacaattgctaatttaaacaacatatcaataaaatactttttctatagagtaat |
30052789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 30037172 - 30037043
Alignment:
| Q |
52 |
tgaataacttcaaaataatttatacctaaaaaagaatcaacatagtagaatgaaatactactatctcaataaattcccaaattaagataaaatatagaat |
151 |
Q |
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|||||| ||||||||| ||||||||| |||||||||||||| ||| || ||||||||||| |||||||||| || |||||| | ||||||||||||||| |
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| T |
30037172 |
tgaatagcttcaaaatgatttataccagaaaaagaatcaacaaagtggattgaaatactacaatctcaataagttgccaaatcaggataaaatatagaat |
30037073 |
T |
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| Q |
152 |
gccaccttaaaacaattgctaatttaaaca |
181 |
Q |
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| T |
30037072 |
gccaccttaaaagaattgataatttaaaca |
30037043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 2475513 - 2475455
Alignment:
| Q |
41 |
tgattcggctctgaataacttcaaaataatttatacctaaaaaagaatcaacatagtag |
99 |
Q |
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| T |
2475513 |
tgatttggctctaactaacttcaaaataacttatacctgaaaaagaatcaacatagtag |
2475455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 12845135 - 12845218
Alignment:
| Q |
49 |
ctctgaataacttcaaaataatttatacctaaaaaag-aatcaacatagtagaatgaaatactactatctcaataaattcccaaa |
132 |
Q |
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|||||| ||||||||||| | ||||||||||||||| |||||||||||| | |||| ||||||| |||||| | | |||||||| |
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| T |
12845135 |
ctctgattaacttcaaaaga-tttatacctaaaaaaataatcaacatagtgggatgagatactacgatctcagtgagttcccaaa |
12845218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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