View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568_low_9 (Length: 465)
Name: NF4568_low_9
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 4130124 - 4129670
Alignment:
| Q |
1 |
ctattgaagacagtggaactaataagtaaaccttgaagaatcggcttaacccggtcgtgtttcttcgaatcgtgtgtagttgaagaaggaccaaaaggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4130124 |
ctattgaagacagtggaactaataagtaaaccttgaagaatcggcttaacccggtcgtctttcttcaaatcgtgtgtagttgaagaaggaccaaaaggag |
4130025 |
T |
|
| Q |
101 |
aaactcttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgc |
200 |
Q |
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| T |
4130024 |
aaactcttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaaactgc |
4129925 |
T |
|
| Q |
201 |
aacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129924 |
aacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctcta |
4129825 |
T |
|
| Q |
301 |
agaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgccaaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4129824 |
agaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgagttgacacccgccaaatt |
4129725 |
T |
|
| Q |
401 |
gattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
455 |
Q |
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| T |
4129724 |
gattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
4129670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 90 - 455
Target Start/End: Complemental strand, 4106848 - 4106483
Alignment:
| Q |
90 |
accaaaaggagaaactcttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgtta |
189 |
Q |
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||||| |||||||||||||||||| | |||||| || | |||||||||| | ||||||||||||| | |||| ||||||||||||| ||| | | |||| |
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| T |
4106848 |
accaagaggagaaactcttgtttttataagtactaaattaccaccactttcttctcttccattagctagaggcgatcttttcttccagcaattttggtta |
4106749 |
T |
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| Q |
190 |
ttgaaaactgcaacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaat |
289 |
Q |
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|||| || |||||| |||||| |||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
4106748 |
ctgaagacaacaacagaacacatacaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctgataatggccaat |
4106649 |
T |
|
| Q |
290 |
ccacatctctaagaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgaca |
389 |
Q |
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||||| | ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||| |
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| T |
4106648 |
tcacatttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaaattgagttgaca |
4106549 |
T |
|
| Q |
390 |
cccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4106548 |
cccgccaaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
4106483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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