View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4569-Insertion-1 (Length: 1024)
Name: NF4569-Insertion-1
Description: NF4569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4569-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 417 - 1008
Target Start/End: Original strand, 9566581 - 9567180
Alignment:
| Q |
417 |
gacaaacactttcaaaagtttgtattatttaaattcttaggactgcaaaagtggggactgaggtttcttttccattgtacaacaagtttagagattcatc |
516 |
Q |
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| T |
9566581 |
gacaaacactttcaaaagtttgtattatttaaattcttaggactgcaaaagtggggactgaggtttcttttccattgtacaacaagtttagagattcatc |
9566680 |
T |
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| Q |
517 |
tctataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagatnnnnnnnnnnnngaagaacgaacaa |
616 |
Q |
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| T |
9566681 |
tctataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagataaaaaagaaaaagaagaacgaacaa |
9566780 |
T |
|
| Q |
617 |
caaaagtatgtctatagacctatgatagtgagtcaagtcggcccaagcatcagacaagtctttgctt-aagccgctcggttcaccctatttaacactcct |
715 |
Q |
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| T |
9566781 |
caaaagtatgtctatagacctatgatagcaagtcaagtcggcccaagcatcagacaagtctttgctttaagccgctcggttc-ccctatttaacactcct |
9566879 |
T |
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| Q |
716 |
acatagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatgcgaatgtgctctcatgatttcaatccttgtctaacttta |
815 |
Q |
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| T |
9566880 |
acatagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatacgaatgtgctctcatgatttcaatccttgtctaacttta |
9566979 |
T |
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| Q |
816 |
agcctcatcttgtctcgagtcggccc-gtcaataacatctccaagcagaagatgtgcacataactttactcttccacgctaaattgatagc-acatctgt |
913 |
Q |
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| T |
9566980 |
agcctcatcttgtgtcgagtcggccctgtcaataacatctccaagcagaagatgtgcacataactttactcttccacgctaaattgatagcaacatctgt |
9567079 |
T |
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| Q |
914 |
ttgttcaatcctataatctttattg-aatctttc-agagagttctaactgaatcaatca-cgat-gactc-acagt-acggtacaaaacctggcattgaa |
1007 |
Q |
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| T |
9567080 |
ttgttcaatcctataatctttattgaaatctttcaagagagttctgactgaatcaatcaccgatggactcaacagtaacggtacaaaacctgccattgaa |
9567179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 9566171 - 9566519
Alignment:
| Q |
7 |
acaaagacctatggaaaagttgttcaagttttgataacaacttcagtgaatgatataacatgcacaactcatgatatatattaaccaattcatgagattt |
106 |
Q |
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| T |
9566171 |
acaaagacctatggaaaagttgtccaagttttgataacaacttcagtgaatggtataacatgcacaactcatgatatatattaaccaattcatgagattt |
9566270 |
T |
|
| Q |
107 |
gcatataggaaccaacatgttattgttttcttttgaagaaaataaaatcttagagaagttttctacacgagtctcttaatatttgaggctgttcaatgtg |
206 |
Q |
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| T |
9566271 |
gcatataggaaccaacatgttattgttttcttctgaagaaaataaaatcttagagaagttttctacatgagtctcttaatatttgaggctgttcaatgtg |
9566370 |
T |
|
| Q |
207 |
ttcattcatgttattgttgtgtttggaaatgtggcatgaactaggaaatgcggcacggacttgccaccacgcgaacgcggttgctcaacattcccaattt |
306 |
Q |
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| T |
9566371 |
ttcattcatgttattgttgtgtttggaaatgtggcatgaactaggaaatgcggcacggacttgccaccacgcggacgcggttgctcaacattcccaattt |
9566470 |
T |
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| Q |
307 |
tagctttaaagtcgtcacattcaatgtgaaaatcacggtttccaaactc |
355 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9566471 |
tagcttcaaagtcgtcacattcgatgtgaaaatcacggtttccaaactc |
9566519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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