View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4569-Insertion-4 (Length: 103)
Name: NF4569-Insertion-4
Description: NF4569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4569-Insertion-4 |
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| [»] scaffold1113 (1 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 66; Significance: 1e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 33010701 - 33010787
Alignment:
| Q |
7 |
agcttggctcttcccaagtatctaactaacactcacaacttgaggataaaacggaacatagttcaatttccttttcttactccacacaactgc |
99 |
Q |
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| T |
33010701 |
agcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatagttcaatttccttttcttactccacacaactgc |
33010787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 32683596 - 32683525
Alignment:
| Q |
32 |
ctaacactcacaacttgaggataaaacggaacatagttcaatttccttttcttactccacacaactgcctaa |
103 |
Q |
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| T |
32683596 |
ctaaaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactctacacaactgcctaa |
32683525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 32685306 - 32685235
Alignment:
| Q |
32 |
ctaacactcacaacttgaggataaaacggaacatagttcaatttccttttcttactccacacaactgcctaa |
103 |
Q |
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| T |
32685306 |
ctaaaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactatacacaactgcctaa |
32685235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 1336 - 1398
Alignment:
| Q |
43 |
aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaa |
103 |
Q |
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| T |
1336 |
aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaa |
1398 |
T |
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Target: scaffold0961 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 2281 - 2219
Alignment:
| Q |
43 |
aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaa |
103 |
Q |
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| T |
2281 |
aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaa |
2219 |
T |
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