View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4569_low_2 (Length: 242)
Name: NF4569_low_2
Description: NF4569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4569_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 27005604 - 27005391
Alignment:
| Q |
16 |
tttttaattggaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggcta |
115 |
Q |
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| T |
27005604 |
tttttaattggaaagaaaatattgatgaatatgcatttgtgaacgggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggcta |
27005505 |
T |
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| Q |
116 |
aactaatgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttcagtcttttgttgttcctgattattaact |
215 |
Q |
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| T |
27005504 |
aactaatgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttcagtcttttgttgttcctgattattaact |
27005405 |
T |
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| Q |
216 |
agttgttgctccct |
229 |
Q |
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| T |
27005404 |
tgttgttgctccct |
27005391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 26991157 - 26991002
Alignment:
| Q |
29 |
agaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaatgatata |
128 |
Q |
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||||||| ||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||| |
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| T |
26991157 |
agaaaattttgatgaatgtg--tttgtgaatgggtatcttgtattcaaatgtgagtggttagtctcacaccggttgaggatgagccaaactaatgatata |
26991060 |
T |
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| Q |
129 |
gaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgttt |
186 |
Q |
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| T |
26991059 |
gaataaagataattcatatggctaatgatcttaggttttgggtggaaatgtagtgttt |
26991002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 26976628 - 26976802
Alignment:
| Q |
22 |
attggaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaa |
121 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||| ||| | | |||||| | |||||| |||||| |||| | | ||| |||| |||||| ||| |
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| T |
26976628 |
attggatagaaaatattgatgaatatctatttgtaaactgatagttggcattcaactttgagtgtttagtcccacattggctgataatgagctaaattaa |
26976727 |
T |
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| Q |
122 |
tgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttcagtcttttgttgtt |
201 |
Q |
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| T |
26976728 |
tgatatagaagagaggcgactcatatgtctaatgttctaaggt-----gtggaaatgtggtgttttagtcttttgctgtt |
26976802 |
T |
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