View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4570-Insertion-2 (Length: 881)
Name: NF4570-Insertion-2
Description: NF4570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4570-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 31 - 488
Target Start/End: Complemental strand, 7614093 - 7613634
Alignment:
| Q |
31 |
tcattagtttacactcaaatcagttgtcggctgacagtcaaacgtggctttcgagtcaaaataggtttggatgttgtattggaccttattattgtcatgg |
130 |
Q |
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| T |
7614093 |
tcattagtttacattcaaatcagttgtcggctgacagttaaacatggctttcgagtcaaaataggcttggatgttgtattggaccttactattgtcgtgg |
7613994 |
T |
|
| Q |
131 |
tagtggttaatgagatccaaaaaggctacaacattgatttaacgtcaggtaaaactgacctaaagttcgtttgaatgacaaaaacgtaatcaaataaata |
230 |
Q |
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| T |
7613993 |
tagtggttaatgagattcaaaaaggctacaacattgatttaacgtcaggtaaaactgacctaaagttcgtttgaatgacaaaaacgtaatcaaata---- |
7613898 |
T |
|
| Q |
231 |
ttcactacgttaaaaattagaaatgtagagaacgtgagtaaatgacaaccgagcagtactaaaacatttttacctcaactcagccgtatgagcaatatat |
330 |
Q |
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| T |
7613897 |
ttcactacgttaaaaattagaaatgtagagaacgtgagtaaatgacaaccgagcagtactaaaacatttttacctcaactcagccgtatgagcaatatat |
7613798 |
T |
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| Q |
331 |
tagctaagacgtgcatgaagacattcccttgataaatgagttatggatgacatggttggcaatatggaagtaaattactagccgacaagacttttttggg |
430 |
Q |
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| T |
7613797 |
tagctaagacgtgcatgaaggcattcccttgataaatgagttatggatgacatggttggcaatatggaagtaaattactagccgacaagacttttttggg |
7613698 |
T |
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| Q |
431 |
atgtaactaagct------ttcattatctacattagtagttttagccgtgatgtaatatagtag |
488 |
Q |
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| T |
7613697 |
atgtaactaagcttacatgttcgttatctacattagtagttttagccgtgatgtaatatagtag |
7613634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 667 - 880
Target Start/End: Complemental strand, 7613483 - 7613271
Alignment:
| Q |
667 |
ttaagtagtaagttcaactttcaacactagacgctctttaaaattgtctagaaatccacaactgagaaatagagtatctaattcaacgtaatcacctgat |
766 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7613483 |
ttaagtagtaagttcaactttcaacactagacgctctttaaagttgtctagaaatccacaactgagaaatagagtatctaattcaacgtaatcacctcat |
7613384 |
T |
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| Q |
767 |
nnnnnnnnntcattattccatatgcaagttaacctacatatcaccttatcaactgagcaaaccacaaatcaaacaagcaaacaactaaccatctgatcac |
866 |
Q |
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| T |
7613383 |
-aaaaaaaatcattattcaacgtgcaaattaacctacatatcaccttatcaactgagcaaaccacaaattaaacaagcaaacaactaaccatctgatcac |
7613285 |
T |
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| Q |
867 |
gattagttggctaa |
880 |
Q |
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| T |
7613284 |
gattagttggctaa |
7613271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 504 - 624
Target Start/End: Complemental strand, 7613647 - 7613526
Alignment:
| Q |
504 |
atgtaatatagtagttagttgttaaaaacatggcattttacttaattagtctaagtctataaatgtttatttgaaggctatattcaacacataataaatc |
603 |
Q |
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| T |
7613647 |
atgtaatatagtagttagttgttaaaaacatggcattttacttaattagtctaagtctataaatgtttatttgaaggctatattcaacacataataaatc |
7613548 |
T |
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| Q |
604 |
aaac-aagtctttacatatctc |
624 |
Q |
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|||| ||||||||||||||||| |
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| T |
7613547 |
aaactaagtctttacatatctc |
7613526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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