View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4570_high_10 (Length: 302)
Name: NF4570_high_10
Description: NF4570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4570_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 38711300 - 38711545
Alignment:
| Q |
7 |
agtgtaccggtgcaacgaaaggtgatgatgatggaccttgatgtcctttgccatggtgtggagacaaaacaacaagatgcaatttttcgccctttagaca |
106 |
Q |
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| T |
38711300 |
agtgtaccggtgcaacgaaaggtgatgatgatggaccttgatgtcctttgccatggtgtggagacaaaacaacaagatgcaacttttcgccctttagaca |
38711399 |
T |
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| Q |
107 |
atttgaaacttttccactgatgaagtaaaagggacctgatttgtccaatagaaaagttgaatgtccactgtccctctcgtagattggattctcggtgttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
38711400 |
atttgaaacttttccactgatgaagtaaaagggacctgatttgtccaataggaaagttgaatgtccactgtccctctcgtggattggattcttggtgttg |
38711499 |
T |
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| Q |
207 |
catgaatcataatcttgtttgtttacttccaacactgaatcagatc |
252 |
Q |
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| T |
38711500 |
catgaatcataatcttgtttgtttacttccaacactgaatcggatc |
38711545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 42094793 - 42094924
Alignment:
| Q |
117 |
tttccactgatgaagtaaaagggacctgatttgtccaatagaaaagttgaatgtccactgtccctctcgtagattggattctcggtgttgcatgaatcat |
216 |
Q |
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| T |
42094793 |
tttccactaatgaagtaaaagggacctgacttgtccaattgaaaggctgaatctccaccttccatcttgtaaatcgggtttttggtgttgcatgaatcat |
42094892 |
T |
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| Q |
217 |
aatcttgtttgtttacttccaacactgaatca |
248 |
Q |
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| T |
42094893 |
gatcttgtttgtttacaaccaacactgaatca |
42094924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 51320077 - 51319905
Alignment:
| Q |
60 |
tggtgtggagacaaaacaacaagatgcaatttttcgccctttagacaatttgaaacttttccactgatgaagtaaaagggacctgatttgtccaatagaa |
159 |
Q |
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||||||||||||||||||||||||| || ||||| || |||| ||||| || ||||||| || ||||||||| || || |||| ||||||||||||| |
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| T |
51320077 |
tggtgtggagacaaaacaacaagattaaacttttcaccatttacgcaattcaaatcttttccgctaatgaagtaatagtgatctgacttgtccaatagaa |
51319978 |
T |
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| Q |
160 |
aagttgaatgtccactgtccctctcgtagattggattctcggtgttgcatgaatcataatcttgtttgtttac |
232 |
Q |
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| T |
51319977 |
aacttgaatctccattgtccatattgtggatcgggttattgatgttgcaagaatcatagtcttgtttgtttac |
51319905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 39711150 - 39711017
Alignment:
| Q |
119 |
tccactgatgaagtaaaagggacctgatttgtccaatagaaaagttgaatgtccactgtccctctcgtagattggattctcggtgttgcatgaatcataa |
218 |
Q |
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| T |
39711150 |
tccactaatgaagtaaaagggacctgttttattcaatgaaaaagttgactctccatcgtccatcttgtagatcagattctttgtgtcgcatgaatcatag |
39711051 |
T |
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| Q |
219 |
tcttgtttgtttacttccaacactgaatcagatc |
252 |
Q |
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| T |
39711050 |
ttttggttgtttaccaccaacacagaatcagatc |
39711017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 39690645 - 39690776
Alignment:
| Q |
117 |
tttccactgatgaagtaaaagggacctgatttgtccaatagaaaagttgaatgtccactgtccctctcgtagattggattctcggtgttgcatgaatcat |
216 |
Q |
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| T |
39690645 |
tttccactgatgaagtaaaagagacttactttgtcaaacttataagttgaatctccatcgctcatcttgtggattggatttttgatgttgcatgaatcat |
39690744 |
T |
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| Q |
217 |
aatcttgtttgtttacttccaacactgaatca |
248 |
Q |
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| T |
39690745 |
aatcgtgtttgtttaccaccaatactgaatca |
39690776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 39704505 - 39704441
Alignment:
| Q |
188 |
gattggattctcggtgttgcatgaatcataatcttgtttgtttacttccaacactgaatcagatc |
252 |
Q |
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| T |
39704505 |
gattggatttttgatgttgcatgaatcataatcgtgtttgtttaccaccaatactgaatcggatc |
39704441 |
T |
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