View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4570_high_6 (Length: 329)
Name: NF4570_high_6
Description: NF4570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4570_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 5800672 - 5800994
Alignment:
| Q |
1 |
taaccgtctatcaaaaatagcnnnnnnnttcaactgaatatatgatatggatatatttttaatttgataagaagttaagcatatatgattgcacaagtgg |
100 |
Q |
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| T |
5800672 |
taaccgtctatcaaaaatagcaaaaaaattcaactgaatatatgatatggatatatttttaatttgataagaagttaagcatatgtgattgcacaagtgg |
5800771 |
T |
|
| Q |
101 |
cacttcacatacactacatcacacaccaaacaaagagatagagaaaggaattcgtcaaaaactttcagttgtttttgcttacaaccaatggttaattgat |
200 |
Q |
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| T |
5800772 |
cacttcacatacactacatcacacaccaaacaaagagatagagaaaggaattcgtcaaaaactttcagttgtttttgtttacaaccaatggttaattgat |
5800871 |
T |
|
| Q |
201 |
aggtagatagataatccattccaattcaccctcttatctctcacattcacacctacttacctataattacgccaaatccaattatctttctaatatatga |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800872 |
aggtagatagataatccattccaattcaccttcttatctctcacattcacacctacttacctataattacgccaaatccaattatctttctaatatatga |
5800971 |
T |
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| Q |
301 |
taagcattcatgatctatgatac |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
5800972 |
taagcattcatgatctatgatac |
5800994 |
T |
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