View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4570_high_7 (Length: 318)

Name: NF4570_high_7
Description: NF4570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4570_high_7
NF4570_high_7
[»] chr1 (1 HSPs)
chr1 (2-296)||(48983100-48983390)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 48983100 - 48983390
Alignment:
Q  2 aatttgtaaaccgtacttagtcaagttccatcacctggtggcaatggcattcattttgggagctgagacatagttcacttaattaattaacacgcttttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48983100 aatttgtaaaccgtacttagtcaagttccatcacctggtggcaatggcattcattttgggagctgagacatagttcacttaattaattaacacgcttttg 48983199  T
Q  102 gtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgatgttgtagagatgacttgtgagggtgaggcagtgtcactcact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||    
T  48983200 gtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgatgttgtagagatgacttgtgagggtgaggcattg----tcact 48983295  T
Q  202 cagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcgtgcacacgacttgtcttttcatcacctatgctatgtt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48983296 cagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcgcgcacacgacttgtcttttcatcacctatgctatgtt 48983390  T

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