View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4570_high_8 (Length: 315)
Name: NF4570_high_8
Description: NF4570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4570_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 37929628 - 37929928
Alignment:
| Q |
11 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcataaattctcaactcagttcagttccaaaagcatcattcta |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37929628 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattctcaactcagttcagttccaaaagcatcattcta |
37929727 |
T |
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| Q |
111 |
aatgctcaacaagaaatagaaagaacttgactatgccatgtacaaagaaaatacttatcacgacttctagaggaagacattacatcctctggattcaagt |
210 |
Q |
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|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37929728 |
aatgctcaacaagaaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagt |
37929827 |
T |
|
| Q |
211 |
tttcatacattccaaggcttcaacgaggagaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattggtcgtagtacctt |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37929828 |
tttcatacattccaaggcttcaacgaggaaaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattggtcgtagtacctt |
37929927 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
|
| |
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| T |
37929928 |
t |
37929928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 37957959 - 37957672
Alignment:
| Q |
11 |
cataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcataaattctcaactcagttcagttccaaaagcatcattcta |
110 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||| ||||| |
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| T |
37957959 |
cataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttcta |
37957860 |
T |
|
| Q |
111 |
aatgctcaacaagaaatagaaagaacttgactatgccatgtacaaagaaaatacttatcacgacttctagaggaagacattacatcctctggattcaagt |
210 |
Q |
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|||| |||||||||| |||||| || ||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||| || ||| | |
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| T |
37957859 |
aatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatt |
37957760 |
T |
|
| Q |
211 |
tttcatacattccaaggcttcaacgaggagaggttctccttgttcttgatgacgtgaacgattcagatcaacttgaaggtttaattgg |
298 |
Q |
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|
|||||| ||||||||| |||| | || ||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||| |
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| T |
37957759 |
tttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattgg |
37957672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 44644770 - 44644653
Alignment:
| Q |
13 |
taggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcataaattctcaactcagttcagttccaaaagcatcattctaaa |
112 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||||||| | |||||| |||| ||||| |||| || ||||||| || |||||||| ||||| |
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| T |
44644770 |
taggaatctggggtatgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaa |
44644671 |
T |
|
| Q |
113 |
tgctcaacaagaaataga |
130 |
Q |
| |
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|| ||||||||||||||| |
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| T |
44644670 |
tgttcaacaagaaataga |
44644653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 34727887 - 34727847
Alignment:
| Q |
15 |
ggaatacggggcatgggagggataggcaaaacaacaattgc |
55 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| |
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| T |
34727887 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34727847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 34731045 - 34731005
Alignment:
| Q |
15 |
ggaatacggggcatgggagggataggcaaaacaacaattgc |
55 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
34731045 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34731005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 34735637 - 34735604
Alignment:
| Q |
22 |
ggggcatgggagggataggcaaaacaacaattgc |
55 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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| T |
34735637 |
ggggcatgggagggatcggcaaaacaacaattgc |
34735604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 18928839 - 18928879
Alignment:
| Q |
15 |
ggaatacggggcatgggagggataggcaaaacaacaattgc |
55 |
Q |
| |
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|||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
18928839 |
ggaatatggggtatgggagggatcggcaaaacaacaattgc |
18928879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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