View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4571-Insertion-2 (Length: 477)

Name: NF4571-Insertion-2
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4571-Insertion-2
NF4571-Insertion-2
[»] chr2 (9 HSPs)
chr2 (163-313)||(38598947-38599098)
chr2 (44-107)||(38599116-38599179)
chr2 (99-154)||(38559565-38559620)
chr2 (390-473)||(16863453-16863536)
chr2 (406-473)||(38576932-38576999)
chr2 (388-474)||(2248930-2249016)
chr2 (120-154)||(38577360-38577394)
chr2 (423-470)||(16576278-16576325)
chr2 (13-43)||(38599166-38599196)
[»] chr1 (3 HSPs)
chr1 (388-473)||(52432656-52432741)
chr1 (438-473)||(3232173-3232208)
chr1 (421-463)||(7104293-7104335)
[»] chr5 (5 HSPs)
chr5 (414-473)||(7215463-7215522)
chr5 (407-473)||(2243311-2243377)
chr5 (412-469)||(17736753-17736810)
chr5 (407-473)||(41264387-41264453)
chr5 (420-473)||(40483877-40483930)
[»] chr7 (1 HSPs)
chr7 (423-472)||(34891563-34891612)
[»] chr8 (1 HSPs)
chr8 (438-473)||(29093581-29093616)
[»] chr3 (1 HSPs)
chr3 (438-472)||(46303415-46303449)
[»] chr6 (1 HSPs)
chr6 (442-470)||(32047039-32047067)


Alignment Details
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 163 - 313
Target Start/End: Complemental strand, 38599098 - 38598947
Alignment:
Q  163 atgcatagaaactaaagtttaatctgtaaaagtattactttaannnnnnnncttcaattaaagtatataaaaatgtatgattggatctgtggtgttgata 262  Q
    |||||||||||||||||||||||||||||||||||||||||||         ||  | |||||||||||||||||||||||||||| |||||||||||||    
T  38599098 atgcatagaaactaaagtttaatctgtaaaagtattactttaatttattttttttcaataaagtatataaaaatgtatgattggatatgtggtgttgata 38598999  T
Q  263 gcatattcga-nnnnnnnnnattaccaaatgtattgccacgttaattaataa 313  Q
    ||||||||||          ||||||||||||||||||||||||||||||||    
T  38598998 gcatattcgattttttttttattaccaaatgtattgccacgttaattaataa 38598947  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 38599179 - 38599116
Alignment:
Q  44 taagaaccatagaagacacacataagaagtggtggatgacgtagatacactgtagatatatatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38599179 taagaaccatagaagacacacataagaagtggtggatgacgtagatacactgtagatatatatg 38599116  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 38559620 - 38559565
Alignment:
Q  99 atatatatgggggaaatgaataacattttctaaagtcaaattatatgcaatgcaac 154  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||    
T  38559620 atatatacaggggaaatggataacattttctaaagtcaaattatatgcaatgcaac 38559565  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 473
Target Start/End: Original strand, 16863453 - 16863536
Alignment:
Q  390 tctttattcttacaggcagttgccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    ||||||||||||||  ||||| |||||| ||| ||||||| || ||| |||||||||||||| |||||| ||||||||| ||||    
T  16863453 tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatc 16863536  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 38576999 - 38576932
Alignment:
Q  406 cagttgccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    ||||| |||||| ||| | ||||| |||||||||||||||||  ||||||||||||||||| ||||||    
T  38576999 cagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatc 38576932  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 2249016 - 2248930
Alignment:
Q  388 catctttattcttacaggcagttgccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatcc 474  Q
    |||||||||||||| |   |||| |||||| ||| |||| || |||||| |||||||||||||| ||| |||||||| |||||||||    
T  2249016 catctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttcttaattgaacatgtggtctccatcc 2248930  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 38577394 - 38577360
Alignment:
Q  120 aacattttctaaagtcaaattatatgcaatgcaac 154  Q
    |||||||||||||||||||||||||||||||||||    
T  38577394 aacattttctaaagtcaaattatatgcaatgcaac 38577360  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 470
Target Start/End: Original strand, 16576278 - 16576325
Alignment:
Q  423 tcaagaagattaaagttcttcatcttcttcattcaacatgtgatctcc 470  Q
    ||||||| || ||| |||||||||| ||||||||||||||||||||||    
T  16576278 tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 16576325  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 38599196 - 38599166
Alignment:
Q  13 tgcatatagaccatgtttaagaaccatagaa 43  Q
    |||||||||||||||||||||||||||||||    
T  38599196 tgcatatagaccatgtttaagaaccatagaa 38599166  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 52432656 - 52432741
Alignment:
Q  388 catctttattcttacaggcagttgccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    |||||||||||||| |  || || |||||| ||| ||||||| |||||| |||||||||| ||||||| |||| ||||||||||||    
T  52432656 catctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatc 52432741  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 473
Target Start/End: Original strand, 3232173 - 3232208
Alignment:
Q  438 ttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    |||||||||||||||||||||||||| |||||||||    
T  3232173 ttcttcatcttcttcattcaacatgtaatctccatc 3232208  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 463
Target Start/End: Original strand, 7104293 - 7104335
Alignment:
Q  421 tatcaagaagattaaagttcttcatcttcttcattcaacatgt 463  Q
    ||||||||| |||||| |||||||||| |||||||||||||||    
T  7104293 tatcaagaatattaaatttcttcatctccttcattcaacatgt 7104335  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 7215522 - 7215463
Alignment:
Q  414 atttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    |||| ||||||||||| |||||| || ||||| |||||||||||||||||||||| ||||    
T  7215522 attttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatc 7215463  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 2243377 - 2243311
Alignment:
Q  407 agttgccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    |||| |||||| ||| ||||||| || ||| |||||||| | |||||||||||||||||||||||||    
T  2243377 agttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatc 2243311  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 17736810 - 17736753
Alignment:
Q  412 ccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctc 469  Q
    |||||| ||| |||| || |||||| |||||||||||||||| |||||||||||||||    
T  17736810 ccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctc 17736753  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 473
Target Start/End: Original strand, 41264387 - 41264453
Alignment:
Q  407 agttgccatttccatatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    ||||| ||||| ||| ||||||| |||||| || ||||| || ||||||||||||||||||| ||||    
T  41264387 agttgtcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatc 41264453  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 40483877 - 40483930
Alignment:
Q  420 atatcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    |||||||||| ||  || |||||||||||||| | |||||||||||||||||||    
T  40483877 atatcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatc 40483930  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 472
Target Start/End: Original strand, 34891563 - 34891612
Alignment:
Q  423 tcaagaagattaaagttcttcatcttcttcattcaacatgtgatctccat 472  Q
    ||||||| || ||| |||||||||| ||||||||||||||||||||||||    
T  34891563 tcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 473
Target Start/End: Original strand, 29093581 - 29093616
Alignment:
Q  438 ttcttcatcttcttcattcaacatgtgatctccatc 473  Q
    |||||||||| |||||||||||||||||||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatc 29093616  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 472
Target Start/End: Original strand, 46303415 - 46303449
Alignment:
Q  438 ttcttcatcttcttcattcaacatgtgatctccat 472  Q
    |||||||||||||| ||||||||||||||||||||    
T  46303415 ttcttcatcttctttattcaacatgtgatctccat 46303449  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 470
Target Start/End: Original strand, 32047039 - 32047067
Alignment:
Q  442 tcatcttcttcattcaacatgtgatctcc 470  Q
    |||||||||||||||||||||||||||||    
T  32047039 tcatcttcttcattcaacatgtgatctcc 32047067  T

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