View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4571-Insertion-3 (Length: 401)
Name: NF4571-Insertion-3
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4571-Insertion-3 |
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| [»] chr6 (10 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 2575286 - 2574895
Alignment:
| Q |
8 |
gtcagaaacatcttacttggttgttttttctaagaaaagaaagtgtagaacaagccaaatgggtggtggtgatcagaaaaatgtttacattgttaagaag |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2575286 |
gtcagaaacatcttacttggttgttttt-ctaagaaaagaaagtgtagaacaagccaaatgggtggtggtgatcagaaaaatgtttacattgttaagaag |
2575188 |
T |
|
| Q |
108 |
aaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggtttttcatggtttttggtttgattggttccattggtgatggca |
207 |
Q |
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| T |
2575187 |
aaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggtttttcatggtttttggtttgattggttccattggtgatggca |
2575088 |
T |
|
| Q |
208 |
tatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtagtgcttctggcgcatcaagcaacaattttgtccatgacatcaataa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2575087 |
tatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtagtgcttctggcgcatcaagcaacaattttgtccatgacatcaataa |
2574988 |
T |
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| Q |
308 |
ggttt--nnnnnnnnnnnnntaacacacacaacttggattctatcttaatcatatttgttggattaatctaactgtttaggctgtgatcgaatcag |
401 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
2574987 |
ggttttctctctctctctcttaacacacacaacttggattctatcttgatcaaatttgttggattaatctaactg---aggctgtgatcgaatcag |
2574895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 63 - 311
Target Start/End: Complemental strand, 2603248 - 2603000
Alignment:
| Q |
63 |
caaatgggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagatt |
162 |
Q |
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||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2603248 |
caaatgggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagatt |
2603149 |
T |
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| Q |
163 |
ggtttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2603148 |
ggtttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtgg |
2603049 |
T |
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| Q |
263 |
tgcttctggcgcatcaagcaacaattttgtccatgacatcaataaggtt |
311 |
Q |
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| T |
2603048 |
tgcttctggcacatcaaacaacaattttgttcatgacatcaataaggtt |
2603000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 66 - 311
Target Start/End: Original strand, 2429282 - 2429527
Alignment:
| Q |
66 |
atgggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggt |
165 |
Q |
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|||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| |
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| T |
2429282 |
atgggtggtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggt |
2429381 |
T |
|
| Q |
166 |
ttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtagtgc |
265 |
Q |
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||||||||| ||||||||| |||| | |||||||||||||| || ||||| |||||||||| || ||| | ||||||||||| |||||||||| |
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| T |
2429382 |
ttttcatggcttttggtttttttggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactctgttggtagtgc |
2429481 |
T |
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| Q |
266 |
ttctggcgcatcaagcaacaattttgtccatgacatcaataaggtt |
311 |
Q |
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|||||| ||||||||| ||||||||||||||| ||||||||||| |
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| T |
2429482 |
ttctggaacatcaagcagcaattttgtccatgatgtcaataaggtt |
2429527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 63 - 312
Target Start/End: Complemental strand, 2679972 - 2679723
Alignment:
| Q |
63 |
caaatgggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagatt |
162 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||| |
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| T |
2679972 |
caaatgggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaggtccattttcatgcatgctgatgttcttgatt |
2679873 |
T |
|
| Q |
163 |
ggtttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtag |
262 |
Q |
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| |||||||||| |||||||||||||||| ||||||||||||| || ||||||| | |||||||| || ||||| |||||||||||||||||| |
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| T |
2679872 |
gttttttcatggcttttggtttgattggtgccattggtgatggactaatgactcctttggttttgtttatcacaagcagaattatgaactctattggtac |
2679773 |
T |
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| Q |
263 |
tgcttctggcgcatcaagcaacaattttgtccatgacatcaataaggttt |
312 |
Q |
| |
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| T |
2679772 |
tatttctggctcatcaagcaccaattttgtacataacatcaatgaggttt |
2679723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 65 - 311
Target Start/End: Complemental strand, 2647527 - 2647278
Alignment:
| Q |
65 |
aatgggtggtggtgatcagaaaaatgtttacatt---gttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagat |
161 |
Q |
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|||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| |
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| T |
2647527 |
aatgggtggtagtgatcagaaaaatgtttccattaatgttaagaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttcttgat |
2647428 |
T |
|
| Q |
162 |
tggtttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggta |
261 |
Q |
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|| || || |||| |||||||||| |||| ||||||||||||| ||| ||||||| | |||||||| || ||| |||||||||||||||||||| |
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| T |
2647427 |
tgtttcttaatggcttttggtttgtttggagccattggtgatggaataatgactcctttgcttttgtttatctcaagcaaacttatgaactctattggta |
2647328 |
T |
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| Q |
262 |
gtgcttctggcgcatcaagcaacaattttgtccatgacatcaataaggtt |
311 |
Q |
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| ||||||| ||||||||||||||||||||||| ||||| || ||||| |
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| T |
2647327 |
ctatttctggcacatcaagcaacaattttgtccataacatctatgaggtt |
2647278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 2615433 - 2615554
Alignment:
| Q |
84 |
aaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggtttttcatggtttttggtt |
183 |
Q |
| |
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|||||||||| |||| | | ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
2615433 |
aaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttttcatggtttttggtt |
2615532 |
T |
|
| Q |
184 |
tgattggttccattggtgatgg |
205 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
2615533 |
tgattggtgccattggtgatgg |
2615554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 2445697 - 2445843
Alignment:
| Q |
63 |
caaatgggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagatt |
162 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
2445697 |
caaatgggtggtggtgagcagaaaaatgtttctattaatgttaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttctagact |
2445796 |
T |
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| Q |
163 |
ggtttttcatggtttttggtttgattggttccattggtgatggcata |
209 |
Q |
| |
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||||||| ||||||||||||| |||| | ||||||||||||||| |
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| T |
2445797 |
ggtttttaatggtttttggttcatttggggctattggtgatggcata |
2445843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 2425857 - 2425913
Alignment:
| Q |
77 |
tgatcagaaaaatgtttacatt---gttaagaagaaaaagaaaaatggttcttttaa |
130 |
Q |
| |
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|||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
2425857 |
tgattagaaaaatgtttccattaatgttaagaagaaaaagaaaaatggttcttttaa |
2425913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 2583068 - 2583142
Alignment:
| Q |
238 |
gcagacttatgaactctattggtagtgcttctggcgcatcaagcaacaattttgtccatgacatcaataaggttt |
312 |
Q |
| |
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||||| ||||||||||||||||| | ||||||| |||||| ||||||||||||||| |||||||| |||||| |
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| T |
2583068 |
gcagaattatgaactctattggttctatttctggcccatcaaagaacaattttgtccataacatcaatgaggttt |
2583142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 2602971 - 2602905
Alignment:
| Q |
334 |
acaacttggattctatcttaatcatatttgttggattaatctaactgtttaggctgtgatcgaatcag |
401 |
Q |
| |
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|||||||||||||||| ||||| | || |||| |||||||||||||||| | ||| |||||||||||| |
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| T |
2602971 |
acaacttggattctattttaataaaatctgttagattaatctaactgttca-gctttgatcgaatcag |
2602905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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