View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4571-Insertion-4 (Length: 389)

Name: NF4571-Insertion-4
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4571-Insertion-4
NF4571-Insertion-4
[»] chr4 (7 HSPs)
chr4 (17-368)||(45858795-45859142)
chr4 (22-370)||(45876731-45877069)
chr4 (35-166)||(56208539-56208670)
chr4 (28-172)||(47293456-47293600)
chr4 (34-172)||(55705881-55706019)
chr4 (39-147)||(54304249-54304357)
chr4 (278-360)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (27-172)||(35854542-35854687)
chr5 (96-172)||(35802504-35802580)
chr5 (39-170)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (36-177)||(24357450-24357591)
chr2 (260-367)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (34-173)||(7972083-7972222)
chr8 (39-172)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 45858795 - 45859142
Alignment:
Q  17 ttcttaaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgaga 116  Q
    |||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  45858795 ttctgaaatcaacctgattatcttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgaga 45858894  T
Q  117 tactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatat 216  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||    |||||||    
T  45858895 tactgcatccttaccggtccaaaccctctcctgtgcagcctcttccatcttgtctacctagtgacaggacagtagcggtaagtaactat----tggatat 45858990  T
Q  217 acgagaaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattg 316  Q
    || || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||  || || ||||||||||||||||||||    
T  45858991 acaaggaggaagaacataaagcatggaaaatagatttttcttaaataaatttaaaacatacagtcatagctcgggaaagggcagctttgtctcgaaattg 45859090  T
Q  317 tttataaacattttctgttctcttggcaaatagcactgcttcatgtggcctg 368  Q
    ||||||| |||| | |||||||||||||||||||  ||||||||||||||||    
T  45859091 tttataagcattctgtgttctcttggcaaatagctttgcttcatgtggcctg 45859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 45876731 - 45877069
Alignment:
Q  22 aaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactg 121  Q
    ||||||||||| ||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  45876731 aaatcaacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctg 45876830  T
Q  122 catccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgag 221  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||  || |||||||    ||||||||    |||| |||  ||    
T  45876831 catccttaccggtccaaaccctcccttgtgcaacctcttccatcttgtctacctagcgacgggatagtagct----gtaactat----tggacatagaag 45876922  T
Q  222 aaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttat 321  Q
      ||||||||||||||||  |||||||| ||||||||  || |||||||||||||||||||||||||| || | ||| || || || |||||||||||||    
T  45876923 ggggaagaacagaaaaca--gaaaatagctttttcttgtatgaatttaaaacatacagtcattgatctggaaaaagccgccttatcacgaaattgtttat 45877020  T
Q  322 aaacattttctgttctcttggcaaatagcactgcttcatgtggcctgca 370  Q
    ||| ||| | ||    ||||||||||||| |||||||||||||||||||    
T  45877021 aaaaattctgtgcagacttggcaaatagctctgcttcatgtggcctgca 45877069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 56208539 - 56208670
Alignment:
Q  35 tgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggt 134  Q
    |||||||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  56208539 tgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggt 56208638  T
Q  135 ccaaaccctcccctgtgcaaccttttccatct 166  Q
    | ||||||||||||||||||||| ||||||||    
T  56208639 ctaaaccctcccctgtgcaacctcttccatct 56208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 47293600 - 47293456
Alignment:
Q  28 acctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcct 127  Q
    ||||| |||| ||||||||||| |||||||| ||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  47293600 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 47293501  T
Q  128 taccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 172  Q
    ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  47293500 tactggtccaaatccttccctgtgcaacctcttccatcttgtcta 47293456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 55706019 - 55705881
Alignment:
Q  34 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 133  Q
    |||| |||||||||||  || |||| ||| |  |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  55706019 ctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccgg 55705920  T
Q  134 tccaaaccctcccctgtgcaaccttttccatcttgtcta 172  Q
    ||||||||||||| || ||||||| ||||||||||||||    
T  55705919 tccaaaccctcccatgcgcaacctcttccatcttgtcta 55705881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 54304357 - 54304249
Alignment:
Q  39 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 138  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||    
T  54304357 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 54304258  T
Q  139 accctcccc 147  Q
    ||| |||||    
T  54304257 accttcccc 54304249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 56208678 - 56208760
Alignment:
Q  278 agtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttcat 360  Q
    |||||||||||| || ||||| || || ||||||||||||||||||| || || || |||||| ||||||||| |||||||||    
T  56208678 agtcattgatctggaaagagccgcattatctcgaaattgtttataaatatgttgtgctctcttagcaaatagctctgcttcat 56208760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 35854687 - 35854542
Alignment:
Q  27 aacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcc 126  Q
    |||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||    
T  35854687 aacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcc 35854588  T
Q  127 ttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 172  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35854587 ttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  96 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 172  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 10521434 - 10521303
Alignment:
Q  39 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 138  Q
    ||||||||||| |||||| | ||| || |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||    
T  10521434 ttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaa 10521335  T
Q  139 accctcccctgtgcaaccttttccatcttgtc 170  Q
    | |||||  |||| || || || |||||||||    
T  10521334 atcctcctatgtggaatctctttcatcttgtc 10521303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 24357591 - 24357450
Alignment:
Q  36 gtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtc 135  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| || || |  |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  24357591 gtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtc 24357492  T
Q  136 caaaccctcccctgtgcaaccttttccatcttgtctacctag 177  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357491 caaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 24357376 - 24357269
Alignment:
Q  260 aataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttca 359  Q
    |||||||||| ||||||||||||| ||||| || | ||| || ||||||||||||||||||||  |||| | ||     |||||||||||| ||||||||    
T  24357376 aataaatttagaacatacagtcatagatctggataaagctgccttgtctcgaaattgtttatatgcattctgtgcagatttggcaaatagctctgcttca 24357277  T
Q  360 tgtggcct 367  Q
    | ||||||    
T  24357276 tctggcct 24357269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 7972083 - 7972222
Alignment:
Q  34 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 133  Q
    |||| |||||| | || |||||||| ||| ||||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| |||||||    
T  7972083 ctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccgg 7972182  T
Q  134 tccaaaccctcccctgtgcaaccttttccatcttgtctac 173  Q
    |||||| ||||| ||||||||||| |||||||||||||||    
T  7972183 tccaaatcctcctctgtgcaacctcttccatcttgtctac 7972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 7961718 - 7961851
Alignment:
Q  39 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 138  Q
    |||||| |||| |||||||| ||| ||||||||||||||  | ||||  |||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||    
T  7961718 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaa 7961817  T
Q  139 accctcccctgtgcaaccttttccatcttgtcta 172  Q
    |  ||||| |||||||||| ||||||||||||||    
T  7961818 attctcccttgtgcaacctcttccatcttgtcta 7961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University