View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4571_high_3 (Length: 422)
Name: NF4571_high_3
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4571_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 129 - 380
Target Start/End: Complemental strand, 1119547 - 1119296
Alignment:
| Q |
129 |
atgtaccagaaggaataacttgatagaatatgtgctacccttgagtcaaagaagacataaatttcaataatttagtatatgaaacatattatgaaaaacc |
228 |
Q |
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| T |
1119547 |
atgtaccagaaggaataacttgatagaatatgtgctacccttgagtcaaagaagacataaatttcaataatttagtatatgaaacatattatgaaaaacc |
1119448 |
T |
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| Q |
229 |
tccaaagtgcatacctgaatgacagcaaaaatagcataaattggagactctggtaaataagaatcaaagtgacccaaagtacaccaaaatgtacaagcag |
328 |
Q |
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| T |
1119447 |
tccaaagtgcatacctgaatgacaacaaaaatagcataaattggagactctggtaaataagaatcaaagtgatccaaagtacaccaaaatgtacaagcag |
1119348 |
T |
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| Q |
329 |
aagaatcgaattgatcaaaagtacaccaaaaatataccaaaatctacaagca |
380 |
Q |
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| T |
1119347 |
aaaaatcaaattgatcaaaagtacaccaaaaatataccaaaatctacaagca |
1119296 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 31310110 - 31310013
Alignment:
| Q |
311 |
accaaaatgtacaagcagaagaatcgaattgatcaaaagtacaccaaaaatatac---caaaatctacaagcaacagcaatgtacaccaaactctacaag |
407 |
Q |
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| T |
31310110 |
accaaaatctacaagcagaagaata-aattaatcaaaagtacaccaaaa-tctacaagcagaatcaacaagcatcaacaatgtacaccaaactctacaag |
31310013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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