View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4571_high_5 (Length: 361)
Name: NF4571_high_5
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4571_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 23 - 343
Target Start/End: Original strand, 42298446 - 42298766
Alignment:
| Q |
23 |
cacagatgtttatcaaagagccttcaccaacctttaaccgatatcttttctcaaataacattttcgagaaaaccaaatattacgtcatataatatattta |
122 |
Q |
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| T |
42298446 |
cacagatgtttatcaaagagccttcaccaacctttaaccgatatcttttctcaaataacattttcgagaaaaccaaatattacgtcatataatatattta |
42298545 |
T |
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| Q |
123 |
atcttttaacatcatagttagactatgtttattttatttatacaagtaatttattaaaaactctatatgacttgaattaatatannnnnnnatttgcaaa |
222 |
Q |
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| T |
42298546 |
atcttttaacatcatagttagactatgtttattttatttatacaagtaatttattaaaaactctatatgacttgaattaatatatttttttatttgcaaa |
42298645 |
T |
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| Q |
223 |
ttaattgtaattgaaccaactatcaattgaacttcaatcttatatgaaaaagttagcttagaaggtgaaggtgtcaggaacatttatacatccgacagtt |
322 |
Q |
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| T |
42298646 |
ttaattgtaattgaaccaactatcaattgaacttcgatcttatatgaaaaaattagcttagaaggtgaatatgtcaggaacatttatacatccgacagtt |
42298745 |
T |
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| Q |
323 |
aagaaatttgaacaacaacgg |
343 |
Q |
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|| |||||||||||||||||| |
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| T |
42298746 |
aaaaaatttgaacaacaacgg |
42298766 |
T |
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