View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4571_low_1 (Length: 1101)
Name: NF4571_low_1
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4571_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 999; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 999; E-Value: 0
Query Start/End: Original strand, 8 - 1083
Target Start/End: Original strand, 36933195 - 36934270
Alignment:
| Q |
8 |
gacatcatcaacatgaaggaaacttgtagttgatattctaaattttgatccatgaatggggaaatgtcgaccttcaagaatttttatgtttgttatctaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36933195 |
gacatcatcaacatgaaggaaacttgtagttgatattctaaattttgatccatgaatgggtaaatgtcgaccttcaagaatttttatgtttgttatctaa |
36933294 |
T |
|
| Q |
108 |
ctgtagtgcttaattttctttcttcaatgttcaatattgcggacttctttctagtgggtgaactgagttcttaagtatgaaactactcatgcgagctgtt |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36933295 |
ctgtagtgcttaattttctttcttcaatgttcaatattgtggacttctttctagtgggtgaactgagttcttaagtatgaaactactcatgcgagctgtt |
36933394 |
T |
|
| Q |
208 |
aaacgacctgcttcacgtcttctcggattgtatgaaaagaatatgtgtctatgagtctatttccttttgctatctgttaattgttaccttaccttgtatg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36933395 |
aaacgacctgcttcacgtcttctcggattgtatgaaaagaatatgtgtctatgagtctgtttccttttgctatctgttaattgttaccttaccttgtatg |
36933494 |
T |
|
| Q |
308 |
ttctgttgatggttttgtggtcctcagctgttctctgtccacaaactattatgtgatttacttggtttcttaaaacnnnnnnnnnnnnnnnaatataaac |
407 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36933495 |
ttcagttgatggttttgtggtcctcagctgttctctttccacaaactattatgtgatttacttggtttcttaaaactttttttttttttttaatataaac |
36933594 |
T |
|
| Q |
408 |
gctcctcgctaattttatttattttataagctggttttatcaattcactaggaattcctcgatggaatagttgttacaaattgatggtgcaggcatagtg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36933595 |
gctcctcgctaattttatttattttataagctggttttatcaattcactaggaattcctcgatggaatagttgttacaaattgatggtgcaggcatagtg |
36933694 |
T |
|
| Q |
508 |
tgtggtagtcttttttctagatgcttccatctgcatcagaaggactattaaattagttacagttcatgtctacttgtttgtggtcctcatgtttcaagtt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36933695 |
tgtggtagtcttttttctagatgcttccatctgcatcagaaggactattaaattagttacagttcatgtctacttgtttgtggtcctcatgtttcaagtt |
36933794 |
T |
|
| Q |
608 |
caacaggttttctgctatcgatcctgctccgtctcgattattcgccttaagggttcttgagttaaaagagcatggcattagtgaggatgaagcaatggaa |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
36933795 |
caacaggttttctgctatcgatcctgctccgtctcgattattcgccttaagggttcttgagttaaaagagcatggcattagtgagaatgaagcaatggaa |
36933894 |
T |
|
| Q |
708 |
gtagcagatgtatgtaacctaaattgattcatgaatatgttcattccgcaatttgttcttactttttgccctctaatagttacattttttgtgtgtgtgc |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36933895 |
gtagcagatgtatgtaacctaaattgattcatgaatatgttcattccgcaatttgttcttactttttgccctctaatagttacattttttgtgtgtgcgc |
36933994 |
T |
|
| Q |
808 |
tttttagatggaatatatagcagagaagaaggctaagaagaaagcatatgcccgtctgaagcaaattgcgcgccttcaagggaagaaactgcttccaaac |
907 |
Q |
| |
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| T |
36933995 |
tttttagatggaatatatagcagagaagaaggctaagaagaaagcatatgcccgtctgaagcaaattgcgcgccttcaagggaagaaactgcttccaaac |
36934094 |
T |
|
| Q |
908 |
ccatttccttgtcctgtcaaggagattcaagccgaggagaggaaatttgttcgtgatcgtttcttcaatcccagcatacgtgaacttgtgaagcaaaaga |
1007 |
Q |
| |
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| T |
36934095 |
ccatttccttgtcctgtcaaggagattcaagccgaggagaggaaatttgttcgtgatcgtttcttcaatcccagcatacgtgaacttgtgaagcaaaaga |
36934194 |
T |
|
| Q |
1008 |
aagaggaatccttgcagagattcggaggagataattggtgattttcagggtaaacttgaacaatatattgaaactt |
1083 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36934195 |
aagaggaatccttgcagagattcggaggaaataattggtgattttcagggtaaacttgaacaatatattgaaactt |
36934270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 432 - 1083
Target Start/End: Original strand, 990873 - 991542
Alignment:
| Q |
432 |
tataagctggttttatcaattcactaggaattcctcgatggaatagttgttacaaattgatggtgcaggcata-------------gtgtgtggtagtct |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
990873 |
tataagctggttttatcaattcactaggaattcctcaatggaatagttgttacaaattgatgatgcaggcatacacaagatgcatagtgtgtggtagtct |
990972 |
T |
|
| Q |
519 |
tttttctagatgcttccatctgcatcagaaggactattaaattagttacagttcatgtctacttgtttgtggtcctcatgtttcaagttcaacaggtttt |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||||| |
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|
| T |
990973 |
tttttctagatgcttccatctgcatcagaaggactattaaattagctacagttcatgtctacttgtttgtggtcataatgttt-aagttcaacaggtttt |
991071 |
T |
|
| Q |
619 |
ctgctatcgatcctgctccgtctcgattattcgccttaagggttcttgagttaaaagagcatggcattagtgaggatgaagcaatggaagtagcagatgt |
718 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
991072 |
ctgctatcgatcctgctccgtctcgattatttgcattaagggttcttgagttaaaagagcatggcattagtgaggatgaagcaatggaagtagcagatgt |
991171 |
T |
|
| Q |
719 |
atgtaacctaaattgattcatgaatatgttcattccgcaatttgttcttactttttgccctctaatagttacatttttt----gtgtgtgtgcttttta- |
813 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
991172 |
atgtaacctaaattgattcatggatatgttcattccggaatttgttcttactttatgccctctaatagttacattttttttgcgtgtgtgtgctttttat |
991271 |
T |
|
| Q |
814 |
-gatggaatatatagcagagaagaaggctaagaagaaagcatatgcccgtctgaagcaaattgcgcgccttcaagggaagaaactgcttccaaacccatt |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
991272 |
agatggaatatatagcagagaagaaggctaagaagaaagcatatgcccgtctgaagcaaattgcgcgccttcaagggaagaaactgcctccaaacccatt |
991371 |
T |
|
| Q |
913 |
tccttgtcctgtcaaggagattcaagccgaggagaggaaatttgttcgtgatcgtttcttcaatcccagcatacgtgaacttgtgaagcaaaagaaagag |
1012 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
991372 |
tccttgtcctgtcaaggagattcaagctgaggagaggaaatttgttcgtgatcgtttcttcaatcccagcatacgtgaacttgtgaagcaaaagaaagag |
991471 |
T |
|
| Q |
1013 |
gaatccttgcagagattcggaggagataattggtgattttcagggtaaacttgaacaatatattgaaactt |
1083 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
991472 |
gaatccatgcagagattcggaggagataattggtgattttcagggtaaacttgaacaatatattgaaactt |
991542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 153 - 383
Target Start/End: Original strand, 990652 - 990863
Alignment:
| Q |
153 |
tctttctagtgggtgaactgagttcttaagtatgaaactactcatgcgagctgttaaacgacctgcttcacgtcttctcggattgtatgaaaagaatatg |
252 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||| ||| | |
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|
| T |
990652 |
tctttctatagggtgaactgagttcttaaatatgaaactactcatgccagctgttaatcgacctgcttcacgttttctcagattgtatgaaaataat--g |
990749 |
T |
|
| Q |
253 |
tgtctatgagtctatttccttttgctatctgttaattgttaccttaccttgtatgttctgttgatggttttgtggtcctcagctgttctctgtccacaaa |
352 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||| | ||| | || |
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|
| T |
990750 |
tgtctatgagtct-----------------gttaattcttacgttaccttctatgttctgttgatggttttgtgctcctcagctgttctttttcctccaa |
990832 |
T |
|
| Q |
353 |
ctattatgtgatttacttggtttcttaaaac |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
990833 |
ctattatgtgatttacttggtttcttaaaac |
990863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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