View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4571_low_11 (Length: 239)
Name: NF4571_low_11
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4571_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 39809842 - 39809613
Alignment:
| Q |
10 |
taagcatttaattaaattgtttatccgagtctaagaataaagtataccttaagaggataatataaagtttcttttcctttttgtcatcagaccatatttc |
109 |
Q |
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| T |
39809842 |
taagcatttaattaaattgtttatccgagtctaagaataaagtataccttaagaggataatataaagtttcttttcctttttgtcatcagaccatatttc |
39809743 |
T |
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| Q |
110 |
caggctagaagcatgcctctgaagttttttctgttgagtctcaatttgtattatctccccaatgccatctcccttttctccttctgacaactcttcagac |
209 |
Q |
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| T |
39809742 |
caggctagaagcatgcctctgaagttttttctgttgagtctcaatttgtattatctccccaatgccatctcccttttctccctctgacaactcttcagac |
39809643 |
T |
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| Q |
210 |
aaatcctctgttgcatcccttcgtccttgc |
239 |
Q |
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| T |
39809642 |
aaatcctctgttgcatcccttcgtccttgc |
39809613 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 15796153 - 15796103
Alignment:
| Q |
55 |
accttaagaggataatataaagtttcttttcctttttgtcatcagaccata |
105 |
Q |
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| T |
15796153 |
accttatgaggacaatataaagcttcttttcatttttatcatcagaccata |
15796103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 44936741 - 44936774
Alignment:
| Q |
2 |
ttatactataagcatttaattaaattgtttatcc |
35 |
Q |
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| T |
44936741 |
ttatactataagcatttaattaagttgtttatcc |
44936774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 34037661 - 34037689
Alignment:
| Q |
4 |
atactataagcatttaattaaattgttta |
32 |
Q |
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| T |
34037661 |
atactataagcatttaattaaattgttta |
34037689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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