View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4571_low_3 (Length: 461)
Name: NF4571_low_3
Description: NF4571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4571_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 29857967 - 29858381
Alignment:
| Q |
18 |
actccttgttgcttaagacatgctgctgttgctagacctgatggtcctgctcctactattataggaccatttacccaaatgcaacgatgtgagactgcgt |
117 |
Q |
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| T |
29857967 |
actccttgttgcttaagacatgctgctgttgctagacctgatggtcctgctcctactattataggaccatttacccaaatgcaacgatgtgagactgcgt |
29858066 |
T |
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| Q |
118 |
cttcttcattatcgactaggcgaatcaagttctccattttgttttaactctcgggttttcagaagaaaatgtttgataatcctgagttcgaccagaaggt |
217 |
Q |
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| T |
29858067 |
cttcttcattatcgactaggcgaatcaagttctccattttgttttaactctcgggttttcagaagaaaatgtttgataatcctgagttcgaccagaaggt |
29858166 |
T |
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| Q |
218 |
actggcgagagtgttgagtatgtttaagatgtttgaaaataatttgtttgttaaagttggaagatgtttaatttgaatgaagaaggtttggaggttgaga |
317 |
Q |
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| T |
29858167 |
actggcgagagtg-------------------ttgaaaatattttgtttgttaaagttggaagaggtttgatttgaatgaagaaggtttggaggttgaga |
29858247 |
T |
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| Q |
318 |
aagagagagaggaactaaggttgagaattgagcatgtgagtttggaatgaatggagagggaaggggggtagagggacttaaatagaggatttaggtgtat |
417 |
Q |
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| T |
29858248 |
aagagagagaggaactaaggttgagaattgagcatgtgagtttggaatgaatggagagggaaggggggtagagggacttaaatagaggatttaggtgtat |
29858347 |
T |
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| Q |
418 |
gatgaaggggagagttaatgtgctttttcctttg |
451 |
Q |
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| T |
29858348 |
gatgaaggggagagttaatgtgctttttcctttg |
29858381 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 39839050 - 39838978
Alignment:
| Q |
31 |
taagacatgctgctgttgctagacctgatggtcctgctcctactattataggaccatttacccaaatgcaacg |
103 |
Q |
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| T |
39839050 |
taagacatgctgccgttgcaagaccagatggacctgcacctatgatcacaggtccattgacccaaatgcaacg |
39838978 |
T |
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