View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572-Insertion-1 (Length: 812)
Name: NF4572-Insertion-1
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 660; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 8 - 808
Target Start/End: Complemental strand, 4749932 - 4749128
Alignment:
| Q |
8 |
atttttaattcaggcaaaaatactttgttaaaataataatacttcttcggtcttaaatataagagaaatttggatcaacaaaatttgatgtatttaatca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
4749932 |
atttttaattcaggcaaaaatactttgttaaaataatagtacttcttcgatcttaaatatacgagaaatttgaatcaacaaaatttaatgtatttaatca |
4749833 |
T |
|
| Q |
108 |
actaaatatatcaacttttgttggccaaactttctacttatgaccggaatcattaatatgataagaaagaattcacctatcgcatacctgtgaaagatat |
207 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4749832 |
actaaatatatcaaattttgttgaccaaactttctacttatgaccggaatcattaatatgataagaaagaattcacctatcgcatacctgagaaagatat |
4749733 |
T |
|
| Q |
208 |
ttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagggttcatagttttgtt |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749732 |
ttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagggttcatagttttgtt |
4749633 |
T |
|
| Q |
308 |
tgttnnnnnnnnnnncagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggtt |
407 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749632 |
tgttaaaaaaaaaaacagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattagtgaggtt |
4749533 |
T |
|
| Q |
408 |
gataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccc |
507 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749532 |
gataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaacttctcaccc |
4749433 |
T |
|
| Q |
508 |
tcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttcattattattgtttctcctcttatgatccaccaagcctttca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4749432 |
tcgtcgtctctggcttccatcaacaactccatcaaatctttttttgtctgttgtttttcattattattgtttctcctcttatgatccaccaaacctttca |
4749333 |
T |
|
| Q |
608 |
acagcttcaccaacttctttcgtgcctaaacacaataggannnnnnnaaatgtaactataagatgtgaatc-aattgtgtacttagatgaataaatgagt |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
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| T |
4749332 |
acagcttcaccaacttctttcgtgcctaaacacaataggatttttttaaatgtaactataaggtgtaaatcaaattgtgtacttagatgaataaatgagt |
4749233 |
T |
|
| Q |
707 |
atataat---ttaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtacaaatgctcaa |
803 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749232 |
atataattaattaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtacaaatgctcaa |
4749133 |
T |
|
| Q |
804 |
ccaaa |
808 |
Q |
| |
|
||||| |
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|
| T |
4749132 |
ccaaa |
4749128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 367 - 641
Target Start/End: Complemental strand, 4758054 - 4757783
Alignment:
| Q |
367 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
466 |
Q |
| |
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|||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
|
| Q |
467 |
gaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttc |
566 |
Q |
| |
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||||||||||||||||||||||||| |||||| || |||||| || ||| || |||||||||| || ||||||| ||| || | |||| | |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaacatcctaccctcttcatctttgacttccatcaataaatccatcatatcttttttcatc---ttttttac |
4757858 |
T |
|
| Q |
567 |
attattattgtttctcctcttatgatccaccaagcctttcaacagcttcaccaacttctttcgtgcctaaacaca |
641 |
Q |
| |
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|||||||| || ||||| || |||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| |
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|
| T |
4757857 |
tttattattattcctccttttttgatccaccaaggcttgcaatagcttcatcaacttctttcttgcctaaacaca |
4757783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 4758324 - 4758195
Alignment:
| Q |
162 |
aatatgataagaaagaattcacctatcgcatacctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttctt |
261 |
Q |
| |
|
||||||| |||||||||||||| | || ||||||| ||||||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |
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|
| T |
4758324 |
aatatgacaagaaagaattcacatttcacatacctttgaaagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtt |
4758225 |
T |
|
| Q |
262 |
gccataatctcttcttgttctttctgaaag |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
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|
| T |
4758224 |
tccatgatctcttcttgttctttctgaaag |
4758195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 17344324 - 17344289
Alignment:
| Q |
65 |
tataagagaaatttggatcaacaaaatttgatgtat |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
17344324 |
tataagagaaatttggatcaacaaaagttgatgtat |
17344289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 41615695 - 41615733
Alignment:
| Q |
65 |
tataagagaaatttggatcaacaaaatttgatgtattta |
103 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
41615695 |
tataagagaaaattggatcaacaaaagttgatgtattta |
41615733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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