View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572-Insertion-2 (Length: 598)
Name: NF4572-Insertion-2
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 7 - 598
Target Start/End: Original strand, 35004477 - 35005071
Alignment:
| Q |
7 |
aaattactccttatatggcaatgatacaaaatgtcatgaataannnnnnncatttaccggccaattgtttggtgaaggttcatcttgtaccacgtttgaa |
106 |
Q |
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| T |
35004477 |
aaattactccttacatggtaatgaaacaaaatgccatgaataatttttttcatttaccggccaattgtttggtgaaggttcatcttgtaccacgtttgaa |
35004576 |
T |
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| Q |
107 |
ggaattgcagtatccaaatctagttgatcagaaaacatgttcattaatataaacttggtaatcacacacattaaaagaagaaccattaaccccccaaata |
206 |
Q |
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| T |
35004577 |
ggaattgcagtatccaaatctagttgatcagaaaacatgttcattaatataaacttggtaatcacacacattaaaagaagaaccattaaccccccaaata |
35004676 |
T |
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| Q |
207 |
aatgtcgttgcttgaattgtttttgccaatatcttattttacgtcgcatagtgaaaatgtctttggtgccaaaagacattaatccataacggtcctctcc |
306 |
Q |
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| T |
35004677 |
aatgtcgttgcttgaattgtttttgccaatatcttattttacgtcgcatagtgaaaatgtctttggtgccaaaagacattaatccataacggtcctctcc |
35004776 |
T |
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| Q |
307 |
tccatccaataggcccctccttggtgccatgaacattcaatgaaataagaattagccaggcttgacaaaagagaaata---attaaatttttaaataagg |
403 |
Q |
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| T |
35004777 |
tccatccaataggcccctccttggtgccatgaacattcaatgaaataagaattagccaggcttgacaaaagagaaataattattaaatttttaaatgagg |
35004876 |
T |
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| Q |
404 |
ttattagagagatttgaattaaggttgatgaatgaagaagaggtaatgagaaacnnnnnnnttaaccataggttcaagtgggtggggttaattggaagga |
503 |
Q |
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| T |
35004877 |
ttattagagagatttgaattaaggttgatgaatgaagaagaggtaatgagaaacaaaaaaattaaccataggttcaagtgggtggggttaattggaagga |
35004976 |
T |
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| Q |
504 |
cttttgtttttctaccttttgtctttggtgaggcttttgtatagttaaatggttattctatatttcatgagagcggaatattaggctatatattc |
598 |
Q |
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| T |
35004977 |
cttttgtttttctaccttttgtctttggtgaggcttttgtatagttaaatggttattctatatttcatgagagcggaatattaggctatatattc |
35005071 |
T |
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