View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4572-Insertion-5 (Length: 467)

Name: NF4572-Insertion-5
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4572-Insertion-5
NF4572-Insertion-5
[»] chr8 (1 HSPs)
chr8 (8-467)||(38124141-38124600)


Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 38124600 - 38124141
Alignment:
Q  8 atacgcgcaatgcatatgaccaaatacacaattaatgattcatttcttcatccacgtgtctactagatttttgagtttcaggtttgattaaagtagttat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124600 atacgcgcaatgcatatgaccaaatacacaattaatgattcatttcttcatccacgtgtctactagatttttgagtttcaggtttgattaaagtagttat 38124501  T
Q  108 ccatgtttagcagcaaattacataataacacagtaataattaataatgaatgagacctgagaaacagcctgcaggttcaggaccatacgctaacaatgga 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124500 ccatgtttagtagcaaattacataataacacagtaataattaataatgaatgagacctgagaaacagcctgcaggttcaggaccatacgctaacaatgga 38124401  T
Q  208 ggaatcgtgagtttgcgtttcccacctaagtaaaaatagtaaataaatttagaaagtgtcatatactatgaacaatgaaacttaaacacttcaaattaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124400 ggaatcgtgagtttgcgtttcccacctaagtaaaaatagtaaataaatttagaaagtgtcatatactatgaacaatgaaacttaaacacttcaaattaaa 38124301  T
Q  308 tttaatacctatccgcattggaggtactccttcaccccctaaaattccctgatccaatccccttattacctgaaaatcccattgaaccttataattacaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124300 tttaatacctatccgcattggaggtactccttcaccccctaaaattccctgatccaatccccttattacctgaaaatcccattgaaccttataattacaa 38124201  T
Q  408 actcatcaaaaatacatagccaaatcaatttaactgtaagaaaaacttatccaccttgcc 467  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124200 actcataaaaaatacatagccaaatcaatttaactgtaagaaaaacttatccaccttgcc 38124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University