View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572-Insertion-6 (Length: 413)
Name: NF4572-Insertion-6
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 161 - 413
Target Start/End: Original strand, 46965066 - 46965318
Alignment:
| Q |
161 |
tgaagaagtttgaaatttaccatttggaagcggaatagagacaacgattgctgagttgacgaattgcgatgcgaagttcgcttctgcaactttctttcga |
260 |
Q |
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| T |
46965066 |
tgaagaagtttgaaatttaccatttggaagcggaatagagacaacgattgctgagttgacgaattgcgatgcgaagttcgcttctgcaactttctttcga |
46965165 |
T |
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| Q |
261 |
actcatctctcttctctgcaacggtaagtttctgtttgaattttcaattatacatccataatttcaaaattttgaagaatggctcattagttcattataa |
360 |
Q |
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| T |
46965166 |
actcatctctcttctctgcaacggtaagtttctgtttgaattttcaattatacatccataatttcaaaattttgaagattggctcattagttcattataa |
46965265 |
T |
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| Q |
361 |
caaaatgactaatttgtcctcaatttgaaaatatcatggctcattagtactcc |
413 |
Q |
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| T |
46965266 |
caaaatgactaatttgtcctcaatttgaaaatatcatggctcattaatactcc |
46965318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 46964880 - 46965036
Alignment:
| Q |
7 |
acttccgacgaatacttgaacttccacgctgaaacctcgtattcgaaggcgtgaatttggatggatcttgcacttcgattcctaccaattgctccgccgc |
106 |
Q |
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| T |
46964880 |
acttccgacgaatacttgaacttccacgctgaaacctcgtattcgaaggcgtgaatttggatggatcttgcacttcgattcctaccaattgctccgccgc |
46964979 |
T |
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| Q |
107 |
cctgcattttcatcaacacgaaatgaaacgtcgtcgtttaaggaatagggaaaatga |
163 |
Q |
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| T |
46964980 |
cctgcattttcatcaacaggaaatgaaacgccgtcgtttaaggaatagggaaaatga |
46965036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 7534588 - 7534676
Alignment:
| Q |
178 |
taccatttggaagcggaatagagacaacgattgctgagttgacgaattgcgatgcgaagttcgcttctgcaactttctttcgaactcat |
266 |
Q |
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| T |
7534588 |
taccatttggaagaagaatagagacaacgatctgtgagttgacgaattgcgatgcgaagttcgcttctgcaactttcttttgaactcat |
7534676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 7534309 - 7534405
Alignment:
| Q |
15 |
cgaatacttgaacttccacgctgaaacctcgtattcgaaggcgtgaatttggatggatcttgcacttcgattcctaccaattgctccgccgccctgcatt |
114 |
Q |
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| T |
7534309 |
cgaatacttgaactacctctctgaaacctcgtatttgatggagtgaacttcgatggatcttgc---tctattcctaccaattgctctgctgccctgcatt |
7534405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 18596735 - 18596646
Alignment:
| Q |
177 |
ttaccatttggaagcggaatagagacaacgattgctgagttgacgaattgcgatgcgaagttcgcttctgcaactttctttcgaactcat |
266 |
Q |
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| T |
18596735 |
ttaccaattggaagctgaatagaggcatcgatcgctgagttgttgaaatgctatgctaagttcggttctgcaactttccttcgaactcat |
18596646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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