View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572-Insertion-7 (Length: 289)
Name: NF4572-Insertion-7
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 29683792 - 29683525
Alignment:
| Q |
22 |
atatgagaaatagaattttaagaaagttagtatattaattcatcatacatatacacatgacttatagtcttattttttattcacaatgtttagaaccagc |
121 |
Q |
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| T |
29683792 |
atataagaaatagaattttaagaaagttagtatattaattcatcatacatatacacatgacttacagtcttattttttattcacaatgtttagaaccagc |
29683693 |
T |
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| Q |
122 |
aagttgctattatggattatctacacaatatcaagagcaatgtgaatatcttcgatgcatgaattacaatctagaggtgcagcgccccaagctcatgccc |
221 |
Q |
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| T |
29683692 |
aagttgctattatggattatctgcacaatatcaagagcaatatgaatatcttcgaagcatgaattacaatctagaggtgcagcgccccaagctcatgccc |
29683593 |
T |
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| Q |
222 |
accgatcggttaaattttcatatcgatgttctctcgcattcagttgattctaactcagttacacgtct |
289 |
Q |
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| T |
29683592 |
accgattggttaaattttcatatcgatgttctctcgcattcagttgattctaactcagttacatgtct |
29683525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 286
Target Start/End: Complemental strand, 35526236 - 35526039
Alignment:
| Q |
89 |
tcttattttttattcacaatgtttagaaccagcaagttgctattatggattatctacacaatatcaagagcaatgtgaatatcttcgatgcatgaattac |
188 |
Q |
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| T |
35526236 |
tcttatgttttattcacattgtttagaaccagcacaatactattatggattgtctgcacaatacaaagagcaatatgaataccttcaaagcatgaactac |
35526137 |
T |
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| Q |
189 |
aatctagaggtgcagcgccccaagctcatgcccaccgatcggttaaattttcatatcgatgttctctcgcattcagttgattctaactcagttacacg |
286 |
Q |
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| T |
35526136 |
aatctagaggtgcaacgccccaagctcaagccagctgatcgactagtctttcacatcaatgttctatcatattcggttgattctaactcagttacacg |
35526039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 35548524 - 35548351
Alignment:
| Q |
113 |
agaaccagcaagttgctattatggattatctacacaatatcaagagcaatgtgaatatcttcgatgcatgaattacaatctagaggtgcagcgccccaag |
212 |
Q |
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| T |
35548524 |
agaaccatcatgttactattatggattgcatgcacattaccaagagcagtatgaataccttcgaagcatgaaccgctatctagaggtgcagcgtcccaaa |
35548425 |
T |
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| Q |
213 |
ctcatgcccaccgatcggttaaattttcatatcgatgttctctcgcattcagttgattctaactcagttacacg |
286 |
Q |
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| T |
35548424 |
cttaagcccactgattggttaaattttcacattgatgttctctcgcattcggttgattctaattcagttacacg |
35548351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 35921745 - 35921871
Alignment:
| Q |
156 |
gagcaatgtgaatatcttcgatgcatgaattacaatctagaggtgcagcgccccaagctcatgcccaccgatcggttaaattttcatatcgatgttctct |
255 |
Q |
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| T |
35921745 |
gagcaatatgaataccttcgaagcatgaagtgcaatctagaggtgcagctccccaagctcacgcccaatgatcggttaaattttttcatc-atgttcttt |
35921843 |
T |
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| Q |
256 |
cgcattcagttgattctaactcagttac |
283 |
Q |
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| T |
35921844 |
cacattcagttgattctaactcaattac |
35921871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 34988709 - 34988774
Alignment:
| Q |
186 |
tacaatctagaggtgcagcgccccaagctcatgcccaccgatcggttaaattttcatatcgatgtt |
251 |
Q |
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| T |
34988709 |
tacaatctacaggtgcatcgcctcaagatcacgcccactgatcggttaaattttcacatcgatgtt |
34988774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 289
Target Start/End: Complemental strand, 35523275 - 35523087
Alignment:
| Q |
104 |
acaatgtttagaaccagcaagttgctattatggattatctacacaatatcaagagcaatgtgaatatcttcgatgcatgaattacaatctagaggtgcag |
203 |
Q |
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| T |
35523275 |
acaatgtacagaatcagcacgttactactatggactgtatgcacaataccaaaaacaatatgaataccttcgaagtatgaactacaatctagaggtgcgg |
35523176 |
T |
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| Q |
204 |
cgccccaagctcatgcccaccgatcggttaaattttcatatcgatgttctctcgcat---tcagttgattctaactcagttacacgtct |
289 |
Q |
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| T |
35523175 |
cgccctaagcttaaacccactgatagattaaactttcatttcagtgttctttcacattgatccattgattctaactcagttactcgtct |
35523087 |
T |
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