View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4572-Insertion-8 (Length: 257)
Name: NF4572-Insertion-8
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572-Insertion-8 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 37836737 - 37836488
Alignment:
| Q |
8 |
atgtaactcgcggaggttggtaaattctgccaaaaactctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaactt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37836737 |
atgtaactcgcggaggttggtaaattctgccaaaaactctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaactt |
37836638 |
T |
|
| Q |
108 |
ctcaaacttgatgggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37836637 |
ctcaaacttgatgggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggtaaaggaccttcca |
37836538 |
T |
|
| Q |
208 |
agttgttgtgagaaagatccaaaatcacaagactcacaagcttacctaac |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37836537 |
agttgttgtgagaaagatccaaaatcacaagactcacaagcttacctaac |
37836488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 37850108 - 37849882
Alignment:
| Q |
9 |
tgtaactcgcggaggttggtaaattctgccaaaaactctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttc |
108 |
Q |
| |
|
|||||||||||||||||| |||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37850108 |
tgtaactcgcggaggttgttaaaatttggcaaaaaccctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatgtttctccaacttc |
37850009 |
T |
|
| Q |
109 |
tcaaacttgatgggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttccaa |
208 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || || ||||| ||||||||||| |
|
|
| T |
37850008 |
ccaaacttgatgggactgatccatttaggaaattgaatcccacatcaaaatgatccattttagtacaatttgacagctgaagaggcaatggaccttccaa |
37849909 |
T |
|
| Q |
209 |
gttgttgtgagaaagatccaaaatcacaag |
238 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
37849908 |
gttgtt---agaaagatccaaaatcacaag |
37849882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 37831032 - 37830794
Alignment:
| Q |
9 |
tgtaactcgcggaggttggtaaattctgccaaaaactctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttc |
108 |
Q |
| |
|
|||||||| || |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||| |
|
|
| T |
37831032 |
tgtaactcacgaaggttgctaaattctgtcaaaaaccctgggatacctccagtgaagtaattttctctgaaaatcaatgtagttatgcgtgcccaacttc |
37830933 |
T |
|
| Q |
109 |
tcaaacttgatgggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttccaa |
208 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||| ||||| || |||||||||||||||||||| |
|
|
| T |
37830932 |
tcaaacttgatgggagtgatccatttaagaaattgaatcccacatcaaaacgatccattttagcacagtttgaaagcctaagtggcaaaggaccttccaa |
37830833 |
T |
|
| Q |
209 |
gttgttgtgagaaagatccaaaatcacaagactcacaag |
247 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
37830832 |
attattgtgagcaagatccaaaatcacaagattcacaag |
37830794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 37842355 - 37842125
Alignment:
| Q |
9 |
tgtaactcgcggaggttggtaaattctgccaaaaactctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttc |
108 |
Q |
| |
|
|||||||| || ||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
37842355 |
tgtaactcacgaaggtttctaaatttagctaaaaactctgggatacctcctgtgaagtaattttctcttaaaatcaatgtggttatgtttgtccaacttc |
37842256 |
T |
|
| Q |
109 |
tcaaacttgatgggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttccaa |
208 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| | |||||| ||||||| | | ||| |||||||| || |||||| |||||||||||| |
|
|
| T |
37842255 |
tcaaatttgatgggagtgatccatttaggaaattgaatcctatatcaaaacgatccatgtgactacagtttgacagctgatgtggcagaggaccttccaa |
37842156 |
T |
|
| Q |
209 |
gttgttgtgagaaagatccaaaatcacaaga |
239 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
37842155 |
gttgttgtgagaaagttccaaaatcacaaga |
37842125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 36865471 - 36865249
Alignment:
| Q |
21 |
aggttggtaaattctgccaaaaactctgggatacctccagtgaagtaattttctcttaaaatcaatgtggttatatttctccaacttctcaaacttgatg |
120 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| || ||||| | ||| ||||| || | ||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
36865471 |
aggttgctaaattctgccaaaaaccctgggataccccctgtgaaatgattatctctcaagaccaatgtgcttatgcctctccaacttatcaaacttgatg |
36865372 |
T |
|
| Q |
121 |
ggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttccaagttgttgtgaga |
220 |
Q |
| |
|
||| || |||||||||||||||||||||||| ||||| ||||||| |||| ||||||||| | || ||||| ||||||||||||||||||||||| |
|
|
| T |
36865371 |
ggaatgatccatttaggaaattgaatcccacgtcaaaacgatccatgttagtacaatttgaaa----aagaggcaatggaccttccaagttgttgtgaga |
36865276 |
T |
|
| Q |
221 |
aagatccaaaatcacaagactcacaag |
247 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
36865275 |
aagatccaaaatcacaagattcacaag |
36865249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 45561235 - 45561127
Alignment:
| Q |
110 |
caaacttgatgggagtgttccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttccaag |
209 |
Q |
| |
|
|||||||||||| | || ||||||| ||| || |||||||||||||||| |||||||||| |||||||||||| || | ||||||||| ||||| ||| |
|
|
| T |
45561235 |
caaacttgatggcaatgaaccatttaagaagttaaatcccacatcaaacttgtccattttagtacaatttgacagctgaaatggcaaaggtccttctaag |
45561136 |
T |
|
| Q |
210 |
ttgttgtga |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
45561135 |
ttgttgtga |
45561127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 40541253 - 40541159
Alignment:
| Q |
129 |
ccatttaggaaattgaatcccacatcaaactgatccattttagaacaatttgacagttggagtggcaaaggaccttccaagttgttgtgagaaag |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||||| | ||| ||||| ||||| |||||||||||||||| ||||| |||| |||||| |
|
|
| T |
40541253 |
ccattaaggaaattgaatcccacatcaaatacactcattttggtacactttgaaagttgatgtggcaaaggaccttctaagttattgtaagaaag |
40541159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University