View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_high_11 (Length: 251)
Name: NF4572_high_11
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 1431367 - 1431137
Alignment:
| Q |
5 |
ttccaagaaatcatcccgaaaaggcattctgccaatgaaaaacagtcattt-ccggaattcaaagggggagttattaattgatgggaaagttaacactat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
1431367 |
ttccaagaaatcatcccgaaaaggcattctgccaatgaaaaacagtcattttccagaattcaa-gggggagttattaattgatgggaaagttaacactct |
1431269 |
T |
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| Q |
104 |
tgtggggtggaataaacacgtcgggatttgtcgtgaaaattgaattcgctctaagttgcattattgattttgaatacatatataatttatatttttagca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| | ||||||||||| ||||||||||| |
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| T |
1431268 |
tgtggggtggaataaacacgtcgggatttgtcgtgaaaattgaatttgctctaagtagcattatcgattttca----atatataatttctatttttagca |
1431173 |
T |
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| Q |
204 |
tacta--atatatcattagagcatgtgttagccttt |
237 |
Q |
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| T |
1431172 |
tactaacatgtatcattagagcatgtgttagacttt |
1431137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 16058196 - 16058366
Alignment:
| Q |
1 |
aaatttccaagaaatcatcccgaaaaggcattctgccaatgaaaaacagtcatttccggaattcaaagggggagttattaattgatgggaaagttaaca- |
99 |
Q |
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||||| ||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
16058196 |
aaattcccacgaaatcatcccgaaaaggcattacaccaatgaaaaatagctatttccggaattcaa-gggggagttatgaattgatgaaaaagtcaacaa |
16058294 |
T |
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| Q |
100 |
ctattgtggggtggaataaacacgtcgggatttgtcgtgaaaattgaattcgctctaagttgcattattgat |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||| |
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| T |
16058295 |
ctattgtggggtggaataaacacgtcgggattggtcgtgaaaaatgaattcgctttaagtagcattattgat |
16058366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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