View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4572_high_13 (Length: 230)

Name: NF4572_high_13
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4572_high_13
NF4572_high_13
[»] chr8 (10 HSPs)
chr8 (1-228)||(38125425-38125663)
chr8 (164-225)||(15196515-15196576)
chr8 (164-217)||(24802570-24802623)
chr8 (181-224)||(36430424-36430467)
chr8 (166-224)||(1673900-1673958)
chr8 (166-225)||(6438208-6438267)
chr8 (195-225)||(43980441-43980471)
chr8 (192-225)||(4410795-4410828)
chr8 (164-225)||(13481321-13481382)
chr8 (197-225)||(36430472-36430500)
[»] chr4 (11 HSPs)
chr4 (164-225)||(32564844-32564905)
chr4 (164-214)||(4473073-4473123)
chr4 (179-225)||(9786325-9786371)
chr4 (179-225)||(42576947-42576993)
chr4 (188-224)||(50438172-50438208)
chr4 (192-226)||(26203088-26203122)
chr4 (164-225)||(7209057-7209118)
chr4 (192-225)||(7209101-7209134)
chr4 (195-224)||(12624914-12624943)
chr4 (164-225)||(44302390-44302451)
chr4 (192-224)||(32564829-32564861)
[»] chr2 (17 HSPs)
chr2 (164-225)||(12457017-12457078)
chr2 (164-225)||(33810616-33810677)
chr2 (164-224)||(9154150-9154210)
chr2 (167-227)||(12890262-12890322)
chr2 (164-226)||(39028777-39028839)
chr2 (164-221)||(14949237-14949294)
chr2 (164-224)||(38985126-38985186)
chr2 (160-223)||(16152538-16152601)
chr2 (183-225)||(19477208-19477250)
chr2 (163-224)||(36887335-36887396)
chr2 (192-227)||(12457061-12457096)
chr2 (164-226)||(19246496-19246559)
chr2 (191-224)||(9154109-9154142)
chr2 (195-224)||(17663842-17663871)
chr2 (195-224)||(20362200-20362229)
chr2 (164-209)||(43939452-43939497)
chr2 (164-208)||(21924851-21924895)
[»] scaffold0001 (1 HSPs)
scaffold0001 (164-223)||(504606-504665)
[»] chr1 (10 HSPs)
chr1 (164-225)||(46836392-46836453)
chr1 (164-223)||(7255149-7255208)
chr1 (169-225)||(6380150-6380206)
chr1 (164-225)||(11248642-11248703)
chr1 (164-224)||(31922856-31922916)
chr1 (164-217)||(6951052-6951105)
chr1 (195-226)||(15512636-15512667)
chr1 (195-226)||(28948819-28948850)
chr1 (184-227)||(43325704-43325747)
chr1 (191-224)||(12844000-12844033)
[»] chr7 (10 HSPs)
chr7 (164-224)||(28885497-28885557)
chr7 (164-226)||(31448379-31448441)
chr7 (164-224)||(19989094-19989154)
chr7 (164-226)||(11575456-11575518)
chr7 (179-224)||(32553683-32553728)
chr7 (180-222)||(25648686-25648728)
chr7 (183-228)||(9077521-9077566)
chr7 (191-224)||(25098244-25098277)
chr7 (164-212)||(5516317-5516365)
chr7 (197-225)||(18121901-18121929)
[»] chr3 (8 HSPs)
chr3 (164-224)||(42380566-42380626)
chr3 (164-224)||(42409280-42409340)
chr3 (164-226)||(33896651-33896713)
chr3 (164-224)||(42380737-42380797)
chr3 (164-224)||(42409451-42409511)
chr3 (192-227)||(42380548-42380583)
chr3 (192-227)||(42409262-42409297)
chr3 (164-225)||(25353855-25353916)
[»] chr5 (9 HSPs)
chr5 (164-226)||(8564909-8564971)
chr5 (164-225)||(16725020-16725081)
chr5 (179-224)||(30264580-30264625)
chr5 (164-224)||(9475083-9475143)
chr5 (178-225)||(32636254-32636301)
chr5 (164-217)||(21743029-21743082)
chr5 (184-227)||(8911748-8911791)
chr5 (195-226)||(39690341-39690372)
chr5 (164-226)||(3103150-3103212)
[»] scaffold0064 (2 HSPs)
scaffold0064 (183-224)||(59434-59475)
scaffold0064 (164-225)||(22372-22433)
[»] scaffold0009 (2 HSPs)
scaffold0009 (164-225)||(143350-143411)
scaffold0009 (192-224)||(143394-143426)
[»] chr6 (4 HSPs)
chr6 (179-223)||(30416953-30416997)
chr6 (179-226)||(1520930-1520977)
chr6 (195-225)||(19839149-19839179)
chr6 (168-217)||(32006915-32006964)
[»] scaffold0263 (2 HSPs)
scaffold0263 (164-214)||(13388-13437)
scaffold0263 (196-225)||(13372-13401)
[»] scaffold0002 (2 HSPs)
scaffold0002 (164-214)||(92016-92065)
scaffold0002 (196-225)||(92000-92029)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38125425 - 38125663
Alignment:
Q  1 tttttcttgtgtaatatacaaaatgatgtttgaactcagatgcaaactagttaaattcatcattattaaccttatcccagtggcttgactaattcatcaa 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38125425 tttttcttgtgcaatatacaaaatgatgtttgaactcagatgcaaactagttaaattcatcattattaaccttatcccagtggcttgacttattcatcaa 38125524  T
Q  101 atttacaacactatactgtttgacgaccgagtgatatttaagatgaatgaggttttgtt-----------tccatatatgtaagctccttttgcctctaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||||    
T  38125525 atttacaacactatactgtttgacgaccgagtgatatttaagatgaatgaggttttgtttactccctccgtccatatatgtaagcaccttttgcctctaa 38125624  T
Q  190 taaaagggtgcttacatatagggacggagggagtataat 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38125625 taaaagggtgcttacatatagggacggagggagtataat 38125663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 15196515 - 15196576
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||  ||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  15196515 tatatgtaagcatctttttcttctaataaaagggtgcttagatatagggacggagggagtat 15196576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 24802570 - 24802623
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacgga 217  Q
    ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  24802570 tatatgtaagcaccttttgcatctaataaaagggtgcttagatatagggacgga 24802623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 36430467 - 36430424
Alignment:
Q  181 tgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  36430467 tgcctctaataaaagggtgcttaaatatagggacggaggaagta 36430424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 1673958 - 1673900
Alignment:
Q  166 tatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||| |||||||| ||| ||||||||||||||| ||| | ||||||||||||||    
T  1673958 tatgtaagcaccttttgcatctgataaaagggtgcttagatacaaggacggagggagta 1673900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 6438267 - 6438208
Alignment:
Q  166 tatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||| || |||  |||||||||||||||||||||||||||| | |||| ||||||    
T  6438267 tatgtaagcaccatttatctctaataaaagggtgcttacatataggaatggagagagtat 6438208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 43980471 - 43980441
Alignment:
Q  195 gggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||||||||||||||||||||||    
T  43980471 gggtgcttacatatagggacggagggagtat 43980441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 4410828 - 4410795
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||| |||||||||||||||||||||    
T  4410828 aaagggtgcttatatatagggacggagggagtat 4410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 13481321 - 13481382
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| || ||| |||||||||||| || | ||| ||||| |||||||||||||||    
T  13481321 tatatgtaagcaccatttacctctaataaaatggagtttaaatataaggacggagggagtat 13481382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 36430472 - 36430500
Alignment:
Q  197 gtgcttacatatagggacggagggagtat 225  Q
    |||||||||||||||||||||||||||||    
T  36430472 gtgcttacatatagggacggagggagtat 36430500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 32564844 - 32564905
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  32564844 tatatgtaagcactctttgcctctaataaaagggtgcttacatatagggacggagggagtat 32564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 4473073 - 4473123
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggac 214  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||||    
T  4473073 tatatgtaagcactctttgcctctaataaaaaggtgcttacatatagggac 4473123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 9786325 - 9786371
Alignment:
Q  179 tttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||    
T  9786325 tttgcctctaataaaagagtgcttacatatcgagacggagggagtat 9786371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 42576947 - 42576993
Alignment:
Q  179 tttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  42576947 tttgcctctaataaaatggtgcttagatataggaacggagggagtat 42576993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 50438208 - 50438172
Alignment:
Q  188 aataaaagggtgcttacatatagggacggagggagta 224  Q
    |||||||||||| ||||||||||||||||||||||||    
T  50438208 aataaaagggtgattacatatagggacggagggagta 50438172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 26203122 - 26203088
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagtata 226  Q
    |||||| ||||||||||||||||||||||||||||    
T  26203122 aaagggggcttacatatagggacggagggagtata 26203088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 7209118 - 7209057
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| |  |||| |||||||||||  ||||||| |||||||||| ||||||||||    
T  7209118 tatatgtaagcactctttgtctctaataaaaaagtgcttagatatagggactgagggagtat 7209057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 7209101 - 7209134
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagtat 225  Q
    |||| |||||||||||||||||||||||||||||    
T  7209101 aaagagtgcttacatatagggacggagggagtat 7209134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 12624914 - 12624943
Alignment:
Q  195 gggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||||||||||||||||||||    
T  12624914 gggtgcttacatatagggacggagggagta 12624943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 44302390 - 44302451
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||| |||||  ||||| ||||||||||||||||||||| ||||| | ||||||| |||||    
T  44302390 tatatctaagcatctttttcctctaataaaagggtgcttaaatataagaacggaggaagtat 44302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 32564861 - 32564829
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagta 224  Q
    |||| ||||||||||||||||||||||||||||    
T  32564861 aaagagtgcttacatatagggacggagggagta 32564829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 12457078 - 12457017
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||    
T  12457078 tatatgtaagcaccctttgcctctaataaaagggtgcttagatatagggacggagggagtat 12457017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 33810677 - 33810616
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| |  ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  33810677 tatatgtaagcacaattttcctctaataaaagggtgcttacatatagggacgaagggagtat 33810616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 9154150 - 9154210
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||| | || ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  9154150 tatatgtaaccacccttttcctctaataaaagggtgcttagatatagggacggagggagta 9154210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 12890322 - 12890262
Alignment:
Q  167 atgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtataa 227  Q
    |||||||| || ||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  12890322 atgtaagcaccattttcctctaataaaaggatgcttagatatagggacggagggagtataa 12890262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 39028777 - 39028839
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||| || ||||| ||||| ||||||||||||  ||||||||||||||||||||||    
T  39028777 tatatgtaagcaccatttgcatctaacaaaagggtgctttgatatagggacggagggagtata 39028839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 14949294 - 14949237
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggaggga 221  Q
    ||||||||||| || ||||||||||||||||| ||||||| || ||||||||||||||    
T  14949294 tatatgtaagcaccatttgcctctaataaaagagtgcttagatgtagggacggaggga 14949237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 38985186 - 38985126
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||| ||||| || ||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  38985186 tatatataagcaccatttccctctaataaaagagtgcttatatatagggacggagggagta 38985126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 16152601 - 16152538
Alignment:
Q  160 tccatatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagt 223  Q
    ||||||||| ||||| || |||| |||||||||||||||||||| ||| ||||||| |||||||    
T  16152601 tccatatatataagcaccctttgtctctaataaaagggtgcttatatagagggacgaagggagt 16152538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 19477208 - 19477250
Alignment:
Q  183 cctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  19477208 cctctaataaaagggtgcttagatatagggacggatggagtat 19477250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 36887335 - 36887396
Alignment:
Q  163 atatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||   |||| ||| |||||||| |||| ||||||||||||||||||||||||    
T  36887335 atatatgtaagcatttttttcctataataaaatggtgtttacatatagggacggagggagta 36887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 12457061 - 12457096
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagtataa 227  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12457061 aaagggtgcttacatatagggacagagggagtataa 12457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 19246496 - 19246559
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagg-gtgcttacatatagggacggagggagtata 226  Q
    |||||||||||  | ||| |||||||||||||| ||||||| ||||| ||||||||||||||||    
T  19246496 tatatgtaagcatcattttcctctaataaaaggtgtgcttagatataaggacggagggagtata 19246559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 9154142 - 9154109
Alignment:
Q  191 aaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||| ||||||||||||||||||||||||    
T  9154142 aaaagggtggttacatatagggacggagggagta 9154109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 17663842 - 17663871
Alignment:
Q  195 gggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||||||||||||||||||||    
T  17663842 gggtgcttacatatagggacggagggagta 17663871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 20362200 - 20362229
Alignment:
Q  195 gggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||||||||||||||||||||    
T  20362200 gggtgcttacatatagggacggagggagta 20362229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 43939452 - 43939497
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatata 209  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||||    
T  43939452 tatatgtaagcactatttgcctctaataaaagggtgcttagatata 43939497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 21924851 - 21924895
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatat 208  Q
    ||||| ||||| |||||| ||||||||||||||||||||| ||||    
T  21924851 tatatataagcaccttttacctctaataaaagggtgcttaaatat 21924895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 504606 - 504665
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagt 223  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  504606 tatatgtaagcaccttttgtctctaataaaaaggtgcttacatatagggacggagggagt 504665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 46836392 - 46836453
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  46836392 tatatgtaagcacattttgcctctaataaaagggtgcttagatatagggacggaaggagtat 46836453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 7255149 - 7255208
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagt 223  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||    
T  7255149 tatatgtaagcacattttccctctaataaaagggtgcttacatataggaacggagggagt 7255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 6380206 - 6380150
Alignment:
Q  169 gtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  6380206 gtaagcaccttttgtctctaataaaagggtgcttagatatagggatggagggagtat 6380150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 11248703 - 11248642
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||| || ||||||||||||||||  ||||||| ||||||||||||||| |||||    
T  11248703 tatatgtaagcaccatttgcctctaataaaatagtgcttagatatagggacggaggaagtat 11248642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 31922856 - 31922916
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||| |  ||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  31922856 tatatgtaaacatcttttgcctttaataaaagggtgcttagatatagggacggagagagta 31922916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 6951052 - 6951105
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacgga 217  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||||| |||||||    
T  6951052 tatatgtaagcacactttgcctctaataaaagggtgcttagatataaggacgga 6951105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 15512667 - 15512636
Alignment:
Q  195 gggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||||||||||||||||||||||||    
T  15512667 gggtgcttacatatagggacggagggagtata 15512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 28948850 - 28948819
Alignment:
Q  195 gggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||||||||||||||||||||||||    
T  28948850 gggtgcttacatatagggacggagggagtata 28948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 43325704 - 43325747
Alignment:
Q  184 ctctaataaaagggtgcttacatatagggacggagggagtataa 227  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  43325704 ctctaataaaagagtgcttacatatagggacggatgaagtataa 43325747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 12844033 - 12844000
Alignment:
Q  191 aaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||| ||||||||||||||||||||||||    
T  12844033 aaaagggtggttacatatagggacggagggagta 12844000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 28885497 - 28885557
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  28885497 tatatgtaagcaccattttcctctaataaaagggtgcttacatataaggacggagggagta 28885557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 31448379 - 31448441
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  31448379 tatatgtaagcaccctttgcatctaataaaagggtgcttagatatagggacggagagagtata 31448441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 19989094 - 19989154
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||| || |||||||||||||||| |||||||| ||||||||||||||| ||||    
T  19989094 tatatgtaagcaccatttgcctctaataaaatggtgcttagatatagggacggaggaagta 19989154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 11575456 - 11575518
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||| | ||||||||||||||||| | |||||| |||||||||||||| |||||||    
T  11575456 tatatgtaagcacattttgcctctaataaaatgatgcttagatatagggacggagagagtata 11575518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 32553728 - 32553683
Alignment:
Q  179 tttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  32553728 tttgtctctaataaaagggtgtttacatatagggacggagggagta 32553683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 25648728 - 25648686
Alignment:
Q  180 ttgcctctaataaaagggtgcttacatatagggacggagggag 222  Q
    |||||||| ||||||||||||||| |||||| |||||||||||    
T  25648728 ttgcctctgataaaagggtgcttatatatagagacggagggag 25648686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 9077566 - 9077521
Alignment:
Q  183 cctctaataaaagggtgcttacatatagggacggagggagtataat 228  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||    
T  9077566 cctctaataaaagagtgcttaaatataaggacggagagagtataat 9077521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 25098277 - 25098244
Alignment:
Q  191 aaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||| ||||||||||||||||||||||||    
T  25098277 aaaagggtggttacatatagggacggagggagta 25098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 5516317 - 5516365
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatataggg 212  Q
    ||||||||||| || ||| ||| |||||||| |||||||||||||||||    
T  5516317 tatatgtaagcaccatttacctttaataaaatggtgcttacatataggg 5516365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 18121929 - 18121901
Alignment:
Q  197 gtgcttacatatagggacggagggagtat 225  Q
    |||||||||||||||||||||||||||||    
T  18121929 gtgcttacatatagggacggagggagtat 18121901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 42380566 - 42380626
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||| || ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  42380566 tatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagta 42380626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 42409280 - 42409340
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||| || ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  42409280 tatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagta 42409340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 33896713 - 33896651
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    ||||||||| | || |||||||||||| |||||||||||| ||||||||||||| | ||||||    
T  33896713 tatatgtaaacaccatttgcctctaatgaaagggtgcttatatatagggacggaagaagtata 33896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 42380737 - 42380797
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    |||||||||||  | ||||||||||||||||||||  ||| |||||||||| |||||||||    
T  42380737 tatatgtaagcatcctttgcctctaataaaagggttattagatatagggacagagggagta 42380797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 42409451 - 42409511
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    |||||||||||  | ||||||||||||||||||||  ||| |||||||||| |||||||||    
T  42409451 tatatgtaagcatcctttgcctctaataaaagggttattagatatagggacagagggagta 42409511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 42380583 - 42380548
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagtataa 227  Q
    |||||||||||||||||||||||||| |||||||||    
T  42380583 aaagggtgcttacatatagggacggatggagtataa 42380548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 42409297 - 42409262
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagtataa 227  Q
    |||||||||||||||||||||||||| |||||||||    
T  42409297 aaagggtgcttacatatagggacggatggagtataa 42409262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 25353916 - 25353855
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    ||||| ||||| || |||| |||||||||||||||||||| |||||| || | |||||||||    
T  25353916 tatatataagcaccgtttgtctctaataaaagggtgcttatatatagagatgaagggagtat 25353855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 8564909 - 8564971
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    |||||||||||   |||| | |||||||||| |||||||||||||||||||||||||||||||    
T  8564909 tatatgtaagcatttttttcttctaataaaaaggtgcttacatatagggacggagggagtata 8564971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 16725081 - 16725020
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||  | |||||||||||||||||||||||||||||||  |||| |||||||||    
T  16725081 tatatgtaagcatcatttgcctctaataaaagggtgcttacatataaagacgaagggagtat 16725020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 30264580 - 30264625
Alignment:
Q  179 tttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  30264580 tttgcctctaataaaagagtgcttagatatagggacggagggagta 30264625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 9475143 - 9475083
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||| ||||||||||| ||||||| |||||||| ||||| |||| |||||||||    
T  9475143 tatatgtaagcaccttttgcctcgaataaaatggtgcttatatataaggacagagggagta 9475083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 32636254 - 32636301
Alignment:
Q  178 ttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  32636254 ttttgcctctaataaaagggtgtttacatataggaacggagagagtat 32636301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 21743029 - 21743082
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacgga 217  Q
    ||||||||||| |  ||||||||||||||||| ||||||| |||||||||||||    
T  21743029 tatatgtaagcactctttgcctctaataaaagagtgcttagatatagggacgga 21743082  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 8911791 - 8911748
Alignment:
Q  184 ctctaataaaagggtgcttacatatagggacggagggagtataa 227  Q
    |||||||||||||||||||||||||| ||| ||| |||||||||    
T  8911791 ctctaataaaagggtgcttacatataaggatggaaggagtataa 8911748  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 39690372 - 39690341
Alignment:
Q  195 gggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||||||||||||||||||||||||    
T  39690372 gggtgcttacatatagggacggagggagtata 39690341  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 3103212 - 3103150
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    ||||| ||||| || ||| ||||||||||||||||| ||| ||||||| ||||| ||||||||    
T  3103212 tatatataagcaccctttacctctaataaaagggtgtttatatataggaacggatggagtata 3103150  T

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Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 59434 - 59475
Alignment:
Q  183 cctctaataaaagggtgcttacatatagggacggagggagta 224  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  59434 cctctaataaaagggtgcttacatatagggatggagggagta 59475  T

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Target: scaffold0064; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 22433 - 22372
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||| |||||| ||||| || |||||||||| |||| ||| ||||||| |||||||||||||    
T  22433 tatacgtaagcacctttagcatctaataaaatggtgtttatatataggaacggagggagtat 22372  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 143411 - 143350
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||  | ||||||||||||||||||||| |||||||||||||| |||| |||||    
T  143411 tatatgtaagcatcctttgcctctaataaaagggtgtttacatatagggacagaggaagtat 143350  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 143394 - 143426
Alignment:
Q  192 aaagggtgcttacatatagggacggagggagta 224  Q
    ||||| |||||||||||||||||||||||||||    
T  143394 aaaggatgcttacatatagggacggagggagta 143426  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 30416953 - 30416997
Alignment:
Q  179 tttgcctctaataaaagggtgcttacatatagggacggagggagt 223  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  30416953 tttgcctctaataaaaggatgcttacatataggggcggagggagt 30416997  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 1520930 - 1520977
Alignment:
Q  179 tttgcctctaataaaagggtgcttacatatagggacggagggagtata 226  Q
    ||||||||||||||||||||||||| ||||| ||| |||| |||||||    
T  1520930 tttgcctctaataaaagggtgcttagatataaggatggagagagtata 1520977  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 19839149 - 19839179
Alignment:
Q  195 gggtgcttacatatagggacggagggagtat 225  Q
    |||||||||||||||||||||||||||||||    
T  19839149 gggtgcttacatatagggacggagggagtat 19839179  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 32006964 - 32006915
Alignment:
Q  168 tgtaagctccttttgcctctaataaaagggtgcttacatatagggacgga 217  Q
    ||||||| || ||||| |||||||||||||| |||| |||||||||||||    
T  32006964 tgtaagcaccgtttgcatctaataaaagggtacttagatatagggacgga 32006915  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 13388 - 13437
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggac 214  Q
    ||||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  13388 tatatgtaagcaccttttgcatctaatagaagggtgcttaca-atagggac 13437  T

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Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 13401 - 13372
Alignment:
Q  196 ggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||||||||||||||||||||||    
T  13401 ggtgcttacatatagggacggagggagtat 13372  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 92016 - 92065
Alignment:
Q  164 tatatgtaagctccttttgcctctaataaaagggtgcttacatatagggac 214  Q
    ||||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  92016 tatatgtaagcaccttttgcatctaatagaagggtgcttaca-atagggac 92065  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 92029 - 92000
Alignment:
Q  196 ggtgcttacatatagggacggagggagtat 225  Q
    ||||||||||||||||||||||||||||||    
T  92029 ggtgcttacatatagggacggagggagtat 92000  T

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