View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_high_3 (Length: 533)
Name: NF4572_high_3
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 9e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 179 - 375
Target Start/End: Complemental strand, 6920558 - 6920363
Alignment:
| Q |
179 |
tttggaccaagctagtttggaatattagcatgaacattccttttaggaaagagttatccttcgtttgaagttatgagtatttgttcgcctttttccccgg |
278 |
Q |
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| T |
6920558 |
tttgggccaagctagtttggaatattagcatgaacattccttttaggaaagagttatccttcgtttgaagttatgagtatttgttcgcctttttccccgg |
6920459 |
T |
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| Q |
279 |
atgcatgaaatacactttactttgaatggcacatagttcaccttctttccctaaaacaaatacaagcagacagagagttgtttatcattacccattg |
375 |
Q |
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| T |
6920458 |
atgcatgcaatgcactttactttgaatggcacatggttcaccttctttccctaaaacaaatacaagcagacagagagtt-tttatcattacccattg |
6920363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 6920745 - 6920589
Alignment:
| Q |
16 |
ctcgtgctatacctatacaggataagcttgttgcagcaagcttatccttctcttttgaatattgttgaatacaatatcattccattggagcaaaggagtg |
115 |
Q |
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| T |
6920745 |
ctcgtgctatacctatacaggataagcttgttgcagcaagcttatccttctcttttgaatattgttgaaaacactatcattccattggagcaaaggagtg |
6920646 |
T |
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| Q |
116 |
atgaattactttggtctcaagctgattatgaacagctttctctaaaatcagcctatg |
172 |
Q |
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| T |
6920645 |
atgaattactttggtctcaagctgattatgaacagctttctctaaaatcagcctatg |
6920589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 515
Target Start/End: Original strand, 22153562 - 22153638
Alignment:
| Q |
439 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaa |
515 |
Q |
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| T |
22153562 |
catcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaa |
22153638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 515
Target Start/End: Original strand, 22209477 - 22209553
Alignment:
| Q |
439 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaa |
515 |
Q |
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| T |
22209477 |
catcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaa |
22209553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 38185266 - 38185325
Alignment:
| Q |
439 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggc |
498 |
Q |
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| T |
38185266 |
catcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaacatgccggc |
38185325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 53562433 - 53562359
Alignment:
| Q |
441 |
tcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaagcacgccggcgaattcaatctccccaa |
515 |
Q |
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||||||||||||||| ||||| |||||||| |||||||||| ||||| |||||||| | || ||||| ||||| |
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| T |
53562433 |
tcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaa |
53562359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 4903995 - 4903946
Alignment:
| Q |
439 |
catcaccgcatcaaacaatccttcggattccaaatccactcgtaaaacaa |
488 |
Q |
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| T |
4903995 |
catcaccgcaacaaacaatccttcagattccaattccactcataaaacaa |
4903946 |
T |
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