View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_high_4 (Length: 463)
Name: NF4572_high_4
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 7 - 446
Target Start/End: Complemental strand, 5319166 - 5318727
Alignment:
| Q |
7 |
tagattatactaataaaattggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttacc |
106 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5319166 |
tagataataataataaaattggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttacc |
5319067 |
T |
|
| Q |
107 |
atttcaagtcaagtgtcatgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgactt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5319066 |
atttcaagtcaagtgtcatgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgactt |
5318967 |
T |
|
| Q |
207 |
caagagcctcaacgtttagcagatgaaatatgttctgctttgcatcaagggatagagccagaaggtgttgctattgtactacaatgcacacatatccctt |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318966 |
caagagcctcaacgtttagcagatgagatatgttctgctttgcatcaagggatagagccagaaggtgttgctattgtactacaatgcacacatatccctt |
5318867 |
T |
|
| Q |
307 |
ttccatacaaagatatcgactcaaacgatatagggtgggttaagttacttgtttcttcaggatctggtgtttatgagaacaaaaatgctgaaatgtggag |
406 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5318866 |
ttccatacaaagatatcgaatcaaacgatatagggtgggttaagttacttgtttcttcaggatctggtgtttatgagaacaaaaatgctgaaatgtggag |
5318767 |
T |
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| Q |
407 |
tgatttctttagtcttcttaagtttagaggtattgacaat |
446 |
Q |
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| T |
5318766 |
tgatttctttagtcttcttaagtttagaggtattgacaat |
5318727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 3637706 - 3637476
Alignment:
| Q |
17 |
taataaaattggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtc |
116 |
Q |
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||||||||| ||||||| ||||| | ||| |||||||||||||| |||| ||||||||||| || || ||||| ||||| ||| |||| || |||||| |
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| T |
3637706 |
taataaaatcggtcatgctggtggtgcaggcggacttgtgattgtccgagacattgacctctattcctactgtgaatcttgtttgctacctttccaagtc |
3637607 |
T |
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| Q |
117 |
aagtgtcatgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctc |
216 |
Q |
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|| |||||||| ||||| |||||||||||||||||||||| || ||||||||||| || | || ||||||| |||||| ||||||||||||||||||| |
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| T |
3637606 |
aaatgtcatgtcggttacgtcccttctggccaaagagttgttggattaagcaagctctctcgtgtcgccgaagtatttgctaaacgacttcaagagcctc |
3637507 |
T |
|
| Q |
217 |
aacgtttagcagatgaaatatgttctgcttt |
247 |
Q |
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| T |
3637506 |
agcgtctggcagacgaagtgtgttcagcttt |
3637476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 303
Target Start/End: Original strand, 19100555 - 19100822
Alignment:
| Q |
36 |
ggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtcatgtaggttata |
135 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||| | | || ||||| ||||| ||| || | ||||| || |||||||||||||| ||||| |
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| T |
19100555 |
ggtggagcaggtggacttgtgattgttagagatattgacttgttttcctattgcgagtcatgcatgcttccattccaggtcaagtgtcatgtcggttacg |
19100654 |
T |
|
| Q |
136 |
tcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgtttagcagatgaaat |
235 |
Q |
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| || || | |||||||||| || |||||||| || | | ||||| || | ||||||||| || |||||||||||||| ||| | ||| ||||| | |
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| T |
19100655 |
ttccctccagtgaaagagttgttggtttaagcaaactctcccgtgttgctgatgtatttgcaaagcggcttcaagagcctcagcgtcttgcaaatgaagt |
19100754 |
T |
|
| Q |
236 |
atgttctgctttgcatcaagggatagagccagaaggtgttgctattgtactacaatgcacacatatcc |
303 |
Q |
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||||||||| ||||||| || ||| ||||||| |||||||| || |||| ||||| ||||| |||| |
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| T |
19100755 |
ttgttctgctctgcatcatggaataaagccagatggtgttgccatcatacttcaatgtacacacatcc |
19100822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 21961060 - 21961312
Alignment:
| Q |
25 |
ttggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtca |
124 |
Q |
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||||||||| ||||||| |||||||||||| |||| |||||| ||||| | | || ||||| |||||||| || | |||||||| ||||||||||| |
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| T |
21961060 |
ttggtcatgctggtggagcaggtggacttgttattgccagagatcttgacttgttttcctattgcaagtcttgcgtgctcccatttcaggtcaagtgtca |
21961159 |
T |
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| Q |
125 |
tgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgttta |
224 |
Q |
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| T |
21961160 |
tgttggttacgttccctctggtgaaagagttatcggtttaagcaaactctcccgtgttgtggatatatctgcaaaatgacttcaagagcctcagcgtctc |
21961259 |
T |
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| Q |
225 |
gcagatgaaatatgttctgctttgcatcaagggatagagccagaaggtgttgc |
277 |
Q |
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||| ||||| | |||| ||||| |||||| || ||| |||||| || |||||| |
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| T |
21961260 |
gcaaatgaagtttgttatgcttcgcatcacggaataaagccagcagatgttgc |
21961312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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