View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_high_7 (Length: 328)
Name: NF4572_high_7
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 35004168 - 35004482
Alignment:
| Q |
1 |
gtgtgaatcacttatatcaaattttactnnnnnnnnnttgagcagtaaagagcttaatttggacgcacgtatatctttctttgctcgtcccatgcaattg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004168 |
gtgtgaatcacttatatcaaattttactaaaaaaaaattgagcagtaaagagcttaatttggacgcacgtatatctttctttgctcgtcccatgcaattg |
35004267 |
T |
|
| Q |
101 |
aaatagttgtcactatttggatgcttccaaatttcgagagtctatctaacaaatatcagaggaaaactagcatcacaatctaaatgtgtttatttttgaa |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004268 |
aaatagttgtcactgtttggatgcttccaaatttcgagagtctatctaacaaacatcagaggaaaactagcatcacaatctaaatgtgtttatttttgaa |
35004367 |
T |
|
| Q |
201 |
atgcaagtaagttgtagaagataaaaagtgaatgaaagatagagaaaaacatgtatgtgcctcacatacaatgtcgcgttttgaagtacaaatgacacaa |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004368 |
atgcaagtaagttgtagaatataaaaagtgaatgaaagatagagaaaaacatgtatgtgcctcacatacaatgtcgcgttttgaagtacaaatgacacaa |
35004467 |
T |
|
| Q |
301 |
acattgtgaaaatta |
315 |
Q |
| |
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||||||||||||||| |
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| T |
35004468 |
acattgtgaaaatta |
35004482 |
T |
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