View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_low_1 (Length: 566)
Name: NF4572_low_1
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 6283845 - 6284379
Alignment:
| Q |
14 |
gagcagagaaggataggtttttccaataacacctccattgattatagatagaggaagggggtactatagttccagaaacacctggaggaaatgtggaggg |
113 |
Q |
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| T |
6283845 |
gagcagagaaggataggtttttccaataacaccgccattaattatagatagaggaagggggtacgatagttctggaaacacctggaggaaatgtggaggg |
6283944 |
T |
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| Q |
114 |
agagtatgtaggaaatagttggatgcggtagggatttttcgttgacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagt |
213 |
Q |
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| T |
6283945 |
agagtaggtaggaaatagttggatgcagtagggatttttcgcttacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagt |
6284044 |
T |
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| Q |
214 |
cggtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttgggg |
313 |
Q |
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| T |
6284045 |
cggtagaacttgaagaagttgatgagttgaataaaggaagaaaggagaaagcaagcagtggtcaatgattgtattgatttataatgtgagaagcttgggg |
6284144 |
T |
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| Q |
314 |
aagatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggttgatatctttcgtgtgggagggttttttcggggtgtgcttggtgtgaggatt |
413 |
Q |
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| T |
6284145 |
aagatcgaaaaggaaaatgattaactagttggtgcgccaacaaaaggttgatatctttcgcgtgggagggttttgtcggggtgtgcttggagtgaggatt |
6284244 |
T |
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| Q |
414 |
cttttaaaaatgttcttttgccattatatctattccaaatatgatataattgcaaagaggagattctgtgagaatcttttcatggttacagatactttga |
513 |
Q |
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| T |
6284245 |
cttttaaaaatgttcttttgccattatatctattccaaatatgatataattgcaaagaggagattctgtgagaatcttttgatggttacagatactttga |
6284344 |
T |
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| Q |
514 |
gagaaggagcttggtgttcggtgggtgattttaat |
548 |
Q |
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| T |
6284345 |
gagaaggagcttggtgttcggtgggtgattttaat |
6284379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 361
Target Start/End: Original strand, 6305577 - 6305719
Alignment:
| Q |
216 |
gtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttggggaa |
315 |
Q |
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|||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||||||||||| | | |
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| T |
6305577 |
gtagaacatgaagaagcagatgtgttgaataaaggaagaagggagaaagcaactagtgatcaatgattgtgttgatttataa--tgagaggcttggag-a |
6305673 |
T |
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| Q |
316 |
gatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggt |
361 |
Q |
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| T |
6305674 |
gatcgaaaaggaaaatgattaactagttggtgcgccaaaaaaaggt |
6305719 |
T |
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