View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_low_15 (Length: 225)
Name: NF4572_low_15
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 1431576 - 1431499
Alignment:
| Q |
125 |
gaataattgttaatcgttgctaaaatttaaagacacaaacaagagatattgtttaattgcgtcatgacgttgtactaa |
202 |
Q |
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| T |
1431576 |
gaataattgttaatcgttgctaaaatttaaagacacaaacaagagatattgtttaattgcgtcatgacgttgtactaa |
1431499 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 1431764 - 1431714
Alignment:
| Q |
7 |
acaataccataaattaattaaataactttacaccaaactcattagttatat |
57 |
Q |
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| T |
1431764 |
acaataccataaattaattaaataattttacaccaaactcattagttatat |
1431714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 1431644 - 1431601
Alignment:
| Q |
81 |
tatatatttacaaaggccaaatttatttacatttttatcattta |
124 |
Q |
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| T |
1431644 |
tatatatatacaaaggccaaatttatttacatttttatcattta |
1431601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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