View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_low_16 (Length: 224)
Name: NF4572_low_16
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 4575351 - 4575558
Alignment:
| Q |
1 |
atataaccccaaacaaatatggttgaagcaaactcaattgcgattatagatatatcgcaaccttgatgttcggcccatactgtgaccgcaaacctttttt |
100 |
Q |
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| T |
4575351 |
atataatcccaatcaaatgtggttgatgcaacctcaattgcgattatagagatatcgcaaccttgatgttcggcccatattgtgaccgcaaacctttttt |
4575450 |
T |
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| Q |
101 |
aacaaccataacatacacacacagatctcttaagaagaaaaacggaacaaaaatgattacctttgaatggtacttgactattctgatacattttagtact |
200 |
Q |
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| T |
4575451 |
aaaaaccataacatacacacacagatctcttaagaagaaaaagggaacaaaaatgattacctttgaatggtacttgactattcagatacattttaggact |
4575550 |
T |
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| Q |
201 |
gagcaaac |
208 |
Q |
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|||||||| |
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| T |
4575551 |
gagcaaac |
4575558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 4561548 - 4561765
Alignment:
| Q |
1 |
atataaccccaaacaaatatggttgaagcaaactcaattgcgattatagatatatcgcaaccttgatgttcggcccatactgtgaccgcaaacctttttt |
100 |
Q |
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|||||| ||||| ||||| ||| ||| | || |||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
4561548 |
atataatcccaatcaaatctggctgatgaaacctcaattgtgattatagagacatcgcaaccttgatgttcggcccatattgtgaccgcaaagctttttt |
4561647 |
T |
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| Q |
101 |
aacaaccataacatacac----------acacagatctcttaagaagaaaaacggaacaaaaatgattacctttgaatggtacttgactattctgataca |
190 |
Q |
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| T |
4561648 |
aaaaaccataacatacacacaaaaacacacacagatctcctaaaaagaaaaagggaacagaaatgattacctttgaatggtagttgactattctgataca |
4561747 |
T |
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| Q |
191 |
ttttagtactgagcaaac |
208 |
Q |
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|||||| ||||||||||| |
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| T |
4561748 |
ttttaggactgagcaaac |
4561765 |
T |
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