View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_low_17 (Length: 218)
Name: NF4572_low_17
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 33399623 - 33399418
Alignment:
| Q |
13 |
tcctcaccttcagcctccccctcaccctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgggctgctagcgtgcagacatcagagt |
112 |
Q |
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| T |
33399623 |
tcctcaccttcagcctccccctcaccctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgggctgctagcgtgcagacatcagagt |
33399524 |
T |
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| Q |
113 |
taacttggtctccggtgccctcgccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgggttgctagcgtgcaggcatcagagat |
212 |
Q |
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| T |
33399523 |
taacttggtctccggtgccctcgccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgggttgctagcgtgcaggcatcagagat |
33399424 |
T |
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| Q |
213 |
aaattg |
218 |
Q |
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|||||| |
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| T |
33399423 |
aaattg |
33399418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 33395738 - 33395538
Alignment:
| Q |
14 |
cctcaccttcagcctccccctcaccctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgggctgctagcgtgcagacatcagagtt |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
33395738 |
cctcaccttcagcctccccgtcaccctcacctgtgccgactcctgaagcagcaccaccttcaaatgcgccatgggctgctagcgtgcagacatcagaaat |
33395639 |
T |
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| Q |
114 |
aacttggtctccggtgccctcgccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgggttgctagcgtgcaggcatcagagata |
213 |
Q |
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| T |
33395638 |
aacttcgtctccggtaccctcaccctcacctacaccggcccatgaagcagcaccgtcttcaaatgcaccatgggctgctggcgcgcagacatcagagata |
33395539 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
33395538 |
a |
33395538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 33395622 - 33395473
Alignment:
| Q |
31 |
ccctcaccctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgggctgctagcgtgcagacatcagagttaacttggtctccggtgc |
130 |
Q |
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||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
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| T |
33395622 |
ccctcaccctcacctacaccggcccatgaagcagcaccgtcttcaaatgcaccatgggctgctggcgcgcagacatcagagataacttggtctccggtgc |
33395523 |
T |
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| Q |
131 |
cctcgccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgg |
186 |
Q |
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| T |
33395522 |
------cctcacctacaccgtcccctgaagtagcaccgccttcaaatgcaccatgg |
33395473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 33399506 - 33399357
Alignment:
| Q |
31 |
ccctcaccctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgggctgctagcgtgcagacatcagagttaacttggtctccggtgc |
130 |
Q |
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||||| ||||||||| || ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||| || |
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| T |
33399506 |
ccctcgccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgggttgctagcgtgcaggcatcagagataaattggtctcctgt-- |
33399409 |
T |
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| Q |
131 |
cctcgccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgg |
186 |
Q |
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|||||||||||||| |||||| |||| ||||| |||||||||||||||||| |
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| T |
33399408 |
----accctcacctacaccggcccctcaagcagcaccaccttcaaatgcaccatgg |
33399357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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