View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_low_2 (Length: 535)
Name: NF4572_low_2
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 2520629 - 2521143
Alignment:
| Q |
1 |
aagattaagcgttgggcaattgtaaacttttcgtcacagtgtgatccgaaacatttgtgcagtatgattaaaaaatgttctgaaatgaaagggatggtaa |
100 |
Q |
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| T |
2520629 |
aagattaagcgttgggcaattgtaaacttttcgtcacagtgtgatacgaaacatttgtgcagtatgattaaaaaatgttctgaaatgaaagggatggtaa |
2520728 |
T |
|
| Q |
101 |
gannnnnnnagtagcaaatacatttttgtgatgtctactccacttgtgtttcaaattctggtttcttttgtagctcatagatcctccgttcgacatattt |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2520729 |
g-tttttttagtagcaaatacatttttgtgatgtctactccacttgtgtttcaaattctggtttcttttgtagctcatagatcctccgttcgacatattt |
2520827 |
T |
|
| Q |
201 |
gaagaggatattcgccataggaatgagtcgccatttgcgagggttgcaagaatgtatgaaatggtaaaggccaagctacctggaccccctacgcatcctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2520828 |
gaagaggatattcgccataggaatgagtcgccatttgcgagggttgcaagaatgtatgaaatggtaaaggccaagctacctggaccccctacgcatcctc |
2520927 |
T |
|
| Q |
301 |
tagctcagcttcttttgtgtattcttccggttagcaggaattgtaacatttatggtaggagttaacaaaattcatttgaatggttattttttcattgttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2520928 |
tagctcagcttcttttgtgtattcttccggttagcaggaattgtaacatttatggtaggagttaacaaaattcatttgaatggttattttttcattgttc |
2521027 |
T |
|
| Q |
401 |
caatgtcctagtgtcactcgttattcgttaaaaaatcctaataaaatatgtaatatataggtccttggaaaagaagatgtcttgttgatgaagggattgc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521028 |
caatgtcctagtgtcactcgttattcgttaaaaaatcctaataaaatatgtaatatataggtccttggaaaagaagatgtcttgttgatgaagggattgc |
2521127 |
T |
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| Q |
501 |
gacacaatgcattgct |
516 |
Q |
| |
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||||||||||||||| |
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| T |
2521128 |
aacacaatgcattgct |
2521143 |
T |
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