View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4572_low_6 (Length: 379)
Name: NF4572_low_6
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4572_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 246703 - 246403
Alignment:
| Q |
1 |
tttccataccttgtcttcctgggtttcacataaaaattcaatttttaagcttagttccagaattatacaatctgggtctttgaaatcgggttccaaagga |
100 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246703 |
tttccataccttggcttccagggtttcacataaaaattcaatttttaagcttagttccagaattatacaatctgggtctttgaaatcgggttccaaagga |
246604 |
T |
|
| Q |
101 |
gctaactttaatgggttttcttattttcttcaatttttaagagattaggtacactgggttttaaaaaccctaagaatgtgcaacattgttgtaattgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246603 |
gctaactttaatgggttttcttattttcttcaatttttaagagattaggtacactgggttttaaaaaccctaagaatgtgcaacattgttgtaattgtgg |
246504 |
T |
|
| Q |
201 |
cagaccaaaaccaagaaggtc-nnnnnnncgttggtttcataagcctagacgtgttttcattgtagttactgtttgttcaggtgtttcattattgtattt |
299 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246503 |
cagaccaaaaccaagaaggtcaaaaaaaacgttggtttcataagcctagacgtgttttcattgtagttactgtttgttcaggtgtttcattattgtattt |
246404 |
T |
|
| Q |
300 |
t |
300 |
Q |
| |
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| |
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|
| T |
246403 |
t |
246403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 21960922 - 21960809
Alignment:
| Q |
37 |
ttcaatttttaagcttagttccagaattatacaatctgggtctttgaaatcgggttccaaaggagctaactttaatgggttttctt-attttcttcaatt |
135 |
Q |
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|||||||||| | | |||||| |||||| | || ||||||| |||||| | |||| |||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
21960922 |
ttcaatttttcaacctagttcgagaattttgcagtctgggtatttgaatttgggtaacaaaggtgctagctttaatgggttttcttcattttcttcaatt |
21960823 |
T |
|
| Q |
136 |
tttaagagattagg |
149 |
Q |
| |
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| |||||||||||| |
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| T |
21960822 |
tctaagagattagg |
21960809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 21960452 - 21960400
Alignment:
| Q |
293 |
tgtattttggaaatatggaaactattccttacacgaagcgaacacatttgatt |
345 |
Q |
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|||||||||| |||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
21960452 |
tgtattttgggaatatggaaactgttccttatacgaagcgaacgcatttgatt |
21960400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 29941415 - 29941371
Alignment:
| Q |
303 |
aaatatggaaactattccttacacgaagcgaacacatttgattct |
347 |
Q |
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| T |
29941415 |
aaatatggaaactattccttacacaaatcgaacacatgtgattct |
29941371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 903896 - 903958
Alignment:
| Q |
88 |
gggttccaaaggagctaactttaatgggttttctt-attttcttcaatttttaagagattagg |
149 |
Q |
| |
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||||||||||| |||| |||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
903896 |
gggttccaaagatgctagctttaatgtgttttcttcattttcttcaatttctaagagattagg |
903958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 904315 - 904367
Alignment:
| Q |
293 |
tgtattttggaaatatggaaactattccttacacgaagcgaacacatttgatt |
345 |
Q |
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|||||||||| |||||||||||| ||||||| || |||||||| ||||||||| |
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| T |
904315 |
tgtattttgggaatatggaaactgttccttatacaaagcgaacgcatttgatt |
904367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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