View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4572_low_7 (Length: 371)

Name: NF4572_low_7
Description: NF4572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4572_low_7
NF4572_low_7
[»] chr8 (5 HSPs)
chr8 (28-320)||(29685196-29685488)
chr8 (30-320)||(29688327-29688638)
chr8 (1-32)||(29685504-29685535)
chr8 (325-357)||(2692151-2692183)
chr8 (325-357)||(33099850-33099882)
[»] chr7 (2 HSPs)
chr7 (28-176)||(37647115-37647264)
chr7 (322-357)||(37546516-37546551)
[»] chr5 (5 HSPs)
chr5 (30-174)||(6606582-6606728)
chr5 (190-320)||(6606790-6606918)
chr5 (31-74)||(1433824-1433867)
chr5 (325-357)||(1611374-1611406)
chr5 (325-357)||(43398585-43398617)
[»] chr2 (5 HSPs)
chr2 (83-150)||(44039510-44039577)
chr2 (322-355)||(9169739-9169772)
chr2 (28-64)||(5818738-5818774)
chr2 (325-357)||(35190454-35190486)
chr2 (325-357)||(36214180-36214212)
[»] chr3 (7 HSPs)
chr3 (29-104)||(5256762-5256837)
chr3 (325-357)||(45644049-45644081)
chr3 (320-357)||(49429261-49429298)
chr3 (325-357)||(3807075-3807107)
chr3 (325-357)||(14030943-14030975)
chr3 (325-357)||(22102348-22102380)
chr3 (325-357)||(22177296-22177328)
[»] chr4 (4 HSPs)
chr4 (28-75)||(21098740-21098787)
chr4 (32-69)||(24747492-24747529)
chr4 (325-357)||(5662036-5662068)
chr4 (325-357)||(32779024-32779056)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 29685488 - 29685196
Alignment:
Q  28 cacactactttaattttgaaaatataaatatacatcataattctttccnnnnnnntatacttcataattattctcttgtgattccgcgttcagtttttaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  29685488 cacactactttaattttgaaaatataaatatacatcataattctttccaaaaaaatatacttcataattattctcttgtgattccgcgttcagtttttaa 29685389  T
Q  128 taatattcattgtggataaaactttttcaacaattatagttgtcacacaaacacacacagaaaactctaaaagaaaatatatcaatgagtgaacaacata 227  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29685388 taatattcattgtggagaaaactctttcaacaattatagttgtcacacatacacacacagaaaactctaaaaggaaatatatcaatgagtgaacaacata 29685289  T
Q  228 ttttcttgtctccactaacgttatagaaaagattgttatgtacataaaataagaaaatactaacaaacacctttaggaaattttttaaacaat 320  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29685288 ttttcttgtctccactaatgttatagaaaagattgttatgtacataaaataagaaaatactaacaaacacctttaagaaattttttaaacaat 29685196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 29688638 - 29688327
Alignment:
Q  30 cactactttaattttgaaaatataaatatacatcataattctttccnnnnnnnta--tacttcataattattctcttgtgattccgcgttcagtttttaa 127  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||        |  || ||||||||| ||||||||  |||| || ||||||| ||||    
T  29688638 cactactttaattttgaaaacataaatttacatcataattctttccaaaaaaaaaaatatttcataattgttctcttggcattctgcattcagttcttaa 29688539  T
Q  128 taatattcattgtggataaaactttttcaacaattatagttgtcacacaaacacacacagaaa--------------------actctaaaagaaaatat 207  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| | |                    |||||||||| ||||||    
T  29688538 taatattcattgtggagaaaactctttcaacaattatagttgtcacacacacacacacatatatatatatatatatattaagaactctaaaaggaaatat 29688439  T
Q  208 atcaatgagtgaacaacatattttcttgtctccactaacgttatagaaaagattgttatgtacataaaataagaaaatactaacaaacacctttaggaaa 307  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| |  |||||||| |    
T  29688438 atcaatgagtgaacaacatatttccttgtctccactaacgttatag-aaatattgttatgtatataaaataagaaaatgctaacaagcgtctttaggaca 29688340  T
Q  308 ttttttaaacaat 320  Q
    |||||||| ||||    
T  29688339 ttttttaagcaat 29688327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 29685535 - 29685504
Alignment:
Q  1 acgcacgtacgcacacacccatccacccacac 32  Q
    ||||||||||||||||||||||||||||||||    
T  29685535 acgcacgtacgcacacacccatccacccacac 29685504  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 2692151 - 2692183
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  2692151 tagtttgttacattttttaaatgataaaggaaa 2692183  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 33099850 - 33099882
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  33099850 tagtttgttacattttttaaatgataaaggaaa 33099882  T

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Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 37647115 - 37647264
Alignment:
Q  28 cacactactttaattttgaaaatataaatatacatcataattctttccnnnnnnn-tatacttcataattattctcttgtgattccgcgttcagttttta 126  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||| ||||||||  ||||||||||| ||| |||    
T  37647115 cacactactttaattttgaaaacataaatatacatcataattctttccataaaaaatatacttcataattgttctcttggaattccgcgttcggttctta 37647214  T
Q  127 ataatattcattgtggataaaactttttcaacaattatagttgtcacaca 176  Q
    ||||||||| | ||||| |||||| |||||||||||||||||||||||||    
T  37647215 ataatattcgtcgtggagaaaactctttcaacaattatagttgtcacaca 37647264  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 37546516 - 37546551
Alignment:
Q  322 atttagtttattacattttttaaatgataaaggaaa 357  Q
    ||||||||| ||||||||||||||||||||||||||    
T  37546516 atttagtttgttacattttttaaatgataaaggaaa 37546551  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 174
Target Start/End: Original strand, 6606582 - 6606728
Alignment:
Q  30 cactactttaattttgaaaatataaatatacatcataattctttccnnnnnnntatac--ttcataattattctcttgtgattccgcgttcagtttttaa 127  Q
    ||||||||||||||||||   |||| |||||||||||||||||||        ||||   ||||||||| ||||||||||||| ||||||||||| ||||    
T  6606582 cactactttaattttgaagtcataattatacatcataattctttcgaaaaaaatatatatttcataattgttctcttgtgatttcgcgttcagttcttaa 6606681  T
Q  128 taatattcattgtggataaaactttttcaacaattatagttgtcaca 174  Q
    |||||||||||||| | |||||  |||||| ||||||||||||||||    
T  6606682 taatattcattgtgcagaaaacactttcaataattatagttgtcaca 6606728  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 320
Target Start/End: Original strand, 6606790 - 6606918
Alignment:
Q  190 aactctaaaagaaaatatatcaatgagtgaacaacatattttcttgtctccactaacgttatagaaaagattgttatgtacat-aaaataagaaaatact 288  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||| ||||||| ||||||  ||||||| || ||||||||||||| ||    
T  6606790 aactctaaaagcaaatataccaatgagtacacaacatattttcttgtcttcactaatgttatag-aaagat--ttatgtatataaaaataagaaaatcct 6606886  T
Q  289 aacaaacacctttaggaaattttttaaacaat 320  Q
    || |||||||||||||| ||| ||||| ||||    
T  6606887 aataaacacctttaggacattctttaagcaat 6606918  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 1433867 - 1433824
Alignment:
Q  31 actactttaattttgaaaatataaatatacatcataattctttc 74  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  1433867 actactttaattttgaaaatataaattcacatcataattctttc 1433824  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 1611406 - 1611374
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  1611406 tagtttgttacattttttaaatgataaaggaaa 1611374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 43398585 - 43398617
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  43398585 tagtttgttacattttttaaatgataaaggaaa 43398617  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 44039577 - 44039510
Alignment:
Q  83 tatacttcataattattctcttgtgattccgcgttcagtttttaataatattcattgtggataaaact 150  Q
    |||| ||||||||| |||||||| |||| | ||||| ||| |||||||||||||||||||| ||||||    
T  44039577 tataattcataattgttctcttgcgatttcacgttcggttcttaataatattcattgtggagaaaact 44039510  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 9169772 - 9169739
Alignment:
Q  322 atttagtttattacattttttaaatgataaagga 355  Q
    ||||||||| ||||||||||||||||||||||||    
T  9169772 atttagtttgttacattttttaaatgataaagga 9169739  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 5818738 - 5818774
Alignment:
Q  28 cacactactttaattttgaaaatataaatatacatca 64  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  5818738 cacactactttaattatgaaaacataaatatacatca 5818774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 35190454 - 35190486
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  35190454 tagtttgttacattttttaaatgataaaggaaa 35190486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 36214212 - 36214180
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  36214212 tagtttgttacattttttaaatgataaaggaaa 36214180  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 5256837 - 5256762
Alignment:
Q  29 acactactttaattttgaaaatataaatatacatcataattctttccnnnnnnntatacttcataattattctctt 104  Q
    |||||| |||||||||||||| |||||||||||| |||||| |||||       |||||||||||||| |||||||    
T  5256837 acactattttaattttgaaaacataaatatacattataattgtttccaaaaaaatatacttcataattgttctctt 5256762  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 45644081 - 45644049
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||||||||||||||||||||||||||||||    
T  45644081 tagtttattacattttttaaatgataaaggaaa 45644049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 49429261 - 49429298
Alignment:
Q  320 taatttagtttattacattttttaaatgataaaggaaa 357  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  49429261 taatctagtttgttacattttttaaatgataaaggaaa 49429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 3807107 - 3807075
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  3807107 tagtttgttacattttttaaatgataaaggaaa 3807075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 14030943 - 14030975
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  14030943 tagtttgttacattttttaaatgataaaggaaa 14030975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 22102380 - 22102348
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  22102380 tagtttgttacattttttaaatgataaaggaaa 22102348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 22177328 - 22177296
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  22177328 tagtttgttacattttttaaatgataaaggaaa 22177296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 21098787 - 21098740
Alignment:
Q  28 cacactactttaattttgaaaatataaatatacatcataattctttcc 75  Q
    ||||| |||||||||||||||| ||||||||||||| || ||||||||    
T  21098787 cacacaactttaattttgaaaacataaatatacatcgtagttctttcc 21098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 24747492 - 24747529
Alignment:
Q  32 ctactttaattttgaaaatataaatatacatcataatt 69  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  24747492 ctactttaattttgaaaacataaatatagatcataatt 24747529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 5662068 - 5662036
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  5662068 tagtttgttacattttttaaatgataaaggaaa 5662036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 32779024 - 32779056
Alignment:
Q  325 tagtttattacattttttaaatgataaaggaaa 357  Q
    |||||| ||||||||||||||||||||||||||    
T  32779024 tagtttgttacattttttaaatgataaaggaaa 32779056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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