View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4573-Insertion-2 (Length: 1021)
Name: NF4573-Insertion-2
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4573-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 957; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 957; E-Value: 0
Query Start/End: Original strand, 7 - 971
Target Start/End: Original strand, 43186290 - 43187254
Alignment:
| Q |
7 |
aattgctacacctttctgtaagccaaaaggttgtgtatctcacttcctttactttgattactttcaatgtagtaaccatctttatacttcactgcatcaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186290 |
aattgctacacctttctgtaagccaaaaggttgtgtatctcacttcctttactttgattactttcaatgtagtaaccatctttatacttcactgcatcaa |
43186389 |
T |
|
| Q |
107 |
aagcatattaatgtaaccaaaagcaccctatgatctcatgcatgcataatgcacaattatttaattacgatagtaactagaaaattaacattctcatatt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186390 |
aagcatattaatgtaaccaaaagcaccctatgatctcatgcatgcataatgcacaattatttaattacgatagtaactagaaaattaacattctcatatt |
43186489 |
T |
|
| Q |
207 |
gatgagtttcaaacaaatatcattgaagataaaagttacatgatcatagacaatgaacaaattgaaaacttaactagagaacattaggatatgttaatca |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43186490 |
gatgagtttcaaacaaatatcattgaagataaaagttacatgatcatagacaatgaacaaattgaaaccttaactagagaacattaggatatgttaatca |
43186589 |
T |
|
| Q |
307 |
ctatccttggatgaaatgtcagaggttattgggttctttgactctttttacatctttctttccatataccagataaagttgaaataacgacggaatttag |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186590 |
ctatccttggatgaaatgtcagaggttattgggttctttgaccctttttacatctttctttccatataccagataaagttgaaataacgacggaatttag |
43186689 |
T |
|
| Q |
407 |
agacaaaaaattaaaattggtcacgatacttggcgtctgtaacacttagtgatgaaaatagagacgaattttgcatttttctgtctctgaatttccgtcg |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186690 |
agacaaaaaattaaaattggtcacgatacttggcgtctgtaacacttagtgatgaaaatagagacgaattttgcatttttctgtctctgaatttccgtcg |
43186789 |
T |
|
| Q |
507 |
ctatttcaactttttctagtatttctgataataatgatttcaatcatgggaatattggatgttgacattagggttttgcatggaaattgatgggttgaag |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43186790 |
ctatttcaactttttctagtatttctgataataatgatttcaatcatgggaatattggatgttgacattagggttttgcatggaaattgatgggttgaag |
43186889 |
T |
|
| Q |
607 |
gagaaggctatgtttgtaggaggacaattattcactgtatcaatcttgtttcctatattctccagttctttgacttgtgctctaagaaacttgaggtaat |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186890 |
gagaaggctatgtttgtaggaggacaattattcactgtatcaatcttgtttcctatattctccagttctttgacttgtgctctaagaaacttgaggtaat |
43186989 |
T |
|
| Q |
707 |
tagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttattctttcccttctttg |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186990 |
tagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttattctttcccttctttg |
43187089 |
T |
|
| Q |
807 |
cctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggcttttccatcacttccaaacccaaattcgtcaccggcctaaatgct |
906 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43187090 |
cctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggcttttccatcacttccaaacccaaattcgtcaccggcctaaatgct |
43187189 |
T |
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| Q |
907 |
gcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaaaggatga |
971 |
Q |
| |
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| T |
43187190 |
gcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaaaggatga |
43187254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 986 - 1020
Target Start/End: Original strand, 43187250 - 43187284
Alignment:
| Q |
986 |
gatgaatttggttgctggaaattgatatttgatga |
1020 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
43187250 |
gatgaatttggttgctggaaattgatatttgatga |
43187284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 693 - 964
Target Start/End: Original strand, 5040653 - 5040933
Alignment:
| Q |
693 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttatt |
792 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||| || ||||| |||||||||||| |
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| T |
5040653 |
aaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacttatt |
5040752 |
T |
|
| Q |
793 |
ctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggctt--------ttccatca----cttccaaac |
880 |
Q |
| |
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||||| ||||| ||||| || || |||||||| ||||| ||||||||||| ||||||||||| || ||||| || ||||| | |||| | |
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| T |
5040753 |
ctttctcttctatgccttgcagcaacagtttgaggatcatttgatatctttacattcttcctcttcggctttttttcaattacatcaatatcatccattc |
5040852 |
T |
|
| Q |
881 |
ccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaa |
964 |
Q |
| |
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| |||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
5040853 |
caaaat---tcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaa |
5040933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 525
Target Start/End: Original strand, 32800933 - 32801085
Alignment:
| Q |
373 |
taccagataaagttgaaataacgacggaatttagagaca-aaaaattaaaattggtcacgatacttggcgtctgtaacacttagtgatgaaaatagagac |
471 |
Q |
| |
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||||||| |||||||||||||| || ||| | || ||| ||||| |||||||||| || | ||||| |||| |||||||||| || ||| ||||||| |
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| T |
32800933 |
taccagaaaaagttgaaataacaacaaaatatggatacagaaaaagtaaaattggtaactaaacttgacgtcgataacacttagcgacaaaattagagac |
32801032 |
T |
|
| Q |
472 |
gaattttgcatttttctgtctctgaatttccgtcgctatttcaactttttctag |
525 |
Q |
| |
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|| ||||||| ||||| |||||| ||||| | ||||||||||||| |||||| |
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| T |
32801033 |
gagttttgca-ttttccgtctctaaatttttatagctatttcaacttgttctag |
32801085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 712 - 851
Target Start/End: Complemental strand, 6259698 - 6259559
Alignment:
| Q |
712 |
gcttcatcaagcattgatgcagtgtccatcttggttccaccaggaac-aatcttctgcaagactctaatcctttcacttattctttcccttctttgccta |
810 |
Q |
| |
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|||||||| | ||| || ||||||||||| || ||||||||||| || |||||| || || | || || |||||||| |||||||| ||||| || || |
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| T |
6259698 |
gcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatctt-tgtaatatccttattctttcactaattctttctcttctatgtctt |
6259600 |
T |
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| Q |
811 |
gccgccacagtttgtggatcctttgatatcttaacattctt |
851 |
Q |
| |
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|| || ||| |||||||||||||||| ||||| |||||||| |
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| T |
6259599 |
gctgctacactttgtggatcctttgaaatcttcacattctt |
6259559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 465 - 527
Target Start/End: Original strand, 32722838 - 32722900
Alignment:
| Q |
465 |
tagagacgaattttgcatttttctgtctctgaatttccgtcgctatttcaactttttctagta |
527 |
Q |
| |
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||||||||||||| ||||||| |||||| || ||| ||| ||||||||||||||||||||| |
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| T |
32722838 |
tagagacgaatttcatatttttccgtctctaaaattctgtcactatttcaactttttctagta |
32722900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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