View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4573-Insertion-5 (Length: 630)

Name: NF4573-Insertion-5
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4573-Insertion-5
NF4573-Insertion-5
[»] chr8 (8 HSPs)
chr8 (339-556)||(40147218-40147433)
chr8 (339-597)||(11325540-11325801)
chr8 (339-556)||(14139526-14139743)
chr8 (349-597)||(12619936-12620185)
chr8 (12-112)||(9336943-9337043)
chr8 (143-258)||(40147612-40147727)
chr8 (276-331)||(40147477-40147532)
chr8 (7-59)||(40147851-40147902)
[»] chr1 (4 HSPs)
chr1 (348-591)||(7713805-7714049)
chr1 (357-426)||(27024188-27024257)
chr1 (276-331)||(27024319-27024374)
chr1 (12-57)||(7713502-7713547)
[»] chr2 (7 HSPs)
chr2 (159-331)||(35917869-35918035)
chr2 (487-597)||(35917614-35917725)
chr2 (339-445)||(35917721-35917826)
chr2 (8-59)||(35918181-35918232)
chr2 (466-517)||(18557765-18557816)
chr2 (352-407)||(18557401-18557456)
chr2 (276-331)||(9795551-9795606)
[»] chr7 (3 HSPs)
chr7 (342-590)||(42694477-42694726)
chr7 (339-398)||(48260839-48260898)
chr7 (276-331)||(48260740-48260795)
[»] chr3 (12 HSPs)
chr3 (339-418)||(45731407-45731486)
chr3 (339-426)||(4172995-4173082)
chr3 (339-426)||(30694566-30694652)
chr3 (339-426)||(4179322-4179409)
chr3 (339-426)||(46589781-46589868)
chr3 (276-331)||(4172896-4172951)
chr3 (276-331)||(4179223-4179278)
chr3 (276-331)||(46589913-46589968)
chr3 (462-512)||(35166230-35166280)
chr3 (276-330)||(45731531-45731585)
chr3 (363-432)||(35166148-35166217)
chr3 (276-331)||(30694696-30694751)
[»] scaffold0740 (1 HSPs)
scaffold0740 (357-426)||(2640-2709)
[»] chr6 (3 HSPs)
chr6 (276-330)||(19403296-19403350)
chr6 (339-400)||(19403395-19403455)
chr6 (278-327)||(15107762-15107811)
[»] scaffold0105 (2 HSPs)
scaffold0105 (357-397)||(18577-18617)
scaffold0105 (276-328)||(18686-18738)
[»] chr4 (4 HSPs)
chr4 (357-397)||(8192002-8192042)
chr4 (276-331)||(54421024-54421079)
chr4 (351-410)||(54421106-54421164)
chr4 (276-328)||(8192111-8192163)
[»] scaffold0057 (1 HSPs)
scaffold0057 (339-426)||(60742-60828)
[»] chr5 (2 HSPs)
chr5 (276-331)||(11140975-11141030)
chr5 (378-426)||(11141082-11141131)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 5e-79; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 339 - 556
Target Start/End: Complemental strand, 40147433 - 40147218
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttgctttcttccttt 438  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||  ||||||| |||||  ||||    
T  40147433 ttgtttctcatatattatatta-ttgaagttatttattctgactttttatttgcaaaaatcgtta-actagattaaaacactactttgttttctaacttt 40147336  T
Q  439 gacttttcaaacatgtttaccagtttcaatttgcttattttagttgttcttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattcagt 538  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  40147335 gacttttcaaacatgtttaccatttttaatttgcttattttagttgttcttttaacatgaatgtaatcaaatatgaaggttgagaaagaagaaattcagt 40147236  T
Q  539 aacacaacctgataatat 556  Q
    |||||| |||||||||||    
T  40147235 aacacagcctgataatat 40147218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 339 - 597
Target Start/End: Original strand, 11325540 - 11325801
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactt-tgctttct-tc-c 435  Q
    ||||||||  || |||| ||||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||||| ||| || |  ||||| || |    
T  11325540 ttgtttctgctacattatattacttgaagttatctattctgacatgttatttgcaaaaatcactacactagattataacattatttattttttctctcac 11325639  T
Q  436 tttgacttttcaaacatgtttaccagtttcaatttgcttattttagttgttcttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattc 535  Q
    |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |||||    
T  11325640 tttgacttttgaaacatgtttactattttcaatttgcttattttagttgttcttttaatatgaatgtaatcaaatatgaaggttgagaaagaaggaattc 11325739  T
Q  536 agtaacacaacctgataatatca-ttggtcagaaaataaagttaatagctcaaattggtgtaa 597  Q
    || ||||||||||||| |||| | ||||| |||||||||||||||||| | ||||||||||||    
T  11325740 aggaacacaacctgat-atattatttggtaagaaaataaagttaatagtttaaattggtgtaa 11325801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 339 - 556
Target Start/End: Original strand, 14139526 - 14139743
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttgctttcttccttt 438  Q
    ||||||||| ||||||  |||| ||||||||||||||| || ||||||||||||||||| || |||||||||||||||| |||||||||||| |  ||||    
T  14139526 ttgtttctcctatattgtattatttgaagttatttattatgcctttttatttgcaaaaagcactacactagattataacattactttgctttttcacttt 14139625  T
Q  439 gacttttcaaacatgtttaccagtttcaatttgcttattttagttgttcttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattcagt 538  Q
    ||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||  ||||||| ||||||| ||||| |     
T  14139626 gacttttgaaacatgtttactattttcaatttgcttattttagttgttcttttaatatgaatgtaatcgaatattgaggttgagaaagaaggaattcggg 14139725  T
Q  539 aacacaacctgataatat 556  Q
    ||||||||||||||||||    
T  14139726 aacacaacctgataatat 14139743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 349 - 597
Target Start/End: Original strand, 12619936 - 12620185
Alignment:
Q  349 tatattacattacttgaagttattt-attctgactttttatttgcaaaaatcattacactagattataactttactttgctttcttcctttgacttttca 447  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||  |||||||| ||||  ||||||||| | |    
T  12619936 tatattatattactttaagttattttattctgactttttatttgcaaaaatcatttcactagattataacactactttgcgttctcactttgacttctta 12620035  T
Q  448 aacatgtttaccagtttcaatttgcttattttagttgttcttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattcagtaacacaacc 547  Q
    |||||| ||| || ||||||||| |||| |||| ||||||||||||| ||||||||||||||||| |||||| | ||| ||||||||| | |||||||||    
T  12620036 aacatgctta-caatttcaatttacttaatttaattgttcttttaacgtgaatgtaatcaaatatgaaggttcagaaacaagaaattcgggaacacaacc 12620134  T
Q  548 tgataatatca-ttggtcagaaaataaagttaatagctcaaattggtgtaa 597  Q
    | || | || | ||||| | |||||||||| ||||||| ||||||||||||    
T  12620135 tcatgacattatttggtaaaaaaataaagtcaatagcttaaattggtgtaa 12620185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 9336943 - 9337043
Alignment:
Q  12 ccacttccatttggattgaaatattgttgcttccaaaattgatataccataccgtactaaaacannnnnnnnaagccacaaaggccctagcaattccttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||        ||||||||  ||||||||||||||||||    
T  9336943 ccacttccatttggattgaaatattgttgcttccaaaattgatatactgtaccgtactaaaacatttcttttaagccacacgggccctagcaattccttt 9337042  T
Q  112 c 112  Q
    |    
T  9337043 c 9337043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 40147727 - 40147612
Alignment:
Q  143 tgtcgtttaacacatgaaagtcccttttcatatttcttagtagttccttttccttttcatttttatagatttaattgccctttcgtttgggatcagttcc 242  Q
    ||||||||| ||||| |||||  ||||  ||||||||||| ||||||||||||||||||||||||||||||| |  |||||| || || ||||||||| |    
T  40147727 tgtcgtttaccacataaaagtttctttctatatttcttagcagttccttttccttttcatttttatagattttacagcccttacggttaggatcagtttc 40147628  T
Q  243 ttggtgtatgcttact 258  Q
    |||||||||| |||||    
T  40147627 ttggtgtatgtttact 40147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 40147532 - 40147477
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  40147532 attaaagttgcatttttaaaattgttgataatttaaatgattcaggtgataatttt 40147477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 40147902 - 40147851
Alignment:
Q  7 ataaaccacttccatttggattgaaatattgttgcttccaaaattgatatacc 59  Q
    |||||| |||||||||| |||||||| ||||  ||||||||||||||||||||    
T  40147902 ataaacaacttccattttgattgaaa-attgcagcttccaaaattgatatacc 40147851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 348 - 591
Target Start/End: Original strand, 7713805 - 7714049
Alignment:
Q  348 atatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttgctttcttcctttgacttttca 447  Q
    |||||||| | |||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||||  |||||||| |||||  |||||||||||||    
T  7713805 atatattatactacttgcagttatttaatctgactttttatttgcaaaaatcactacacttgattataatattactttgttttctctctttgacttttca 7713904  T
Q  448 aacatgtttaccagtttcaatttgcttattttagttgttcttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattcagtaacacaacc 547  Q
    ||||||||||| | |||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||| ||||||||||||||  |||||||||    
T  7713905 aacatgtttactattttcaatttgcttattttagttgtttctttaacatgaatgtaatcgaatataaatgttgagaaagaagaaattcaagaacacaacc 7714004  T
Q  548 tgataatatca-ttggtcagaaaataaagttaatagctcaaattg 591  Q
     | |||||| | ||  | |||||||||||||||||||| ||||||    
T  7714005 gggtaatattatttaataagaaaataaagttaatagcttaaattg 7714049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 27024257 - 27024188
Alignment:
Q  357 attacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    |||| |||||||| |||||||||||||||||||| ||||| ||  |||| |||| |||||| ||||||||    
T  27024257 attatttgaagttgtttattctgactttttattttcaaaattcgctacagtagactataacattactttg 27024188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 27024374 - 27024319
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||| ||| ||||||||||| |||||||||| |||| | ||||||||||||    
T  27024374 attaaagtttcatctttaaaattgtagataatttgactgatcctgatgataatttt 27024319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 7713502 - 7713547
Alignment:
Q  12 ccacttccatttggattgaaatattgttgcttccaaaattgatata 57  Q
    |||||| |||||  |||||||||||| |||||||||||||||||||    
T  7713502 ccactttcattttaattgaaatattgctgcttccaaaattgatata 7713547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 159 - 331
Target Start/End: Complemental strand, 35918035 - 35917869
Alignment:
Q  159 aaagtcccttttcatatttcttagtagttccttttccttttcatttttatagatttaattgccctttcgtttgggatcagttccttggtgtatgcttact 258  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    |||| |  || ||||||||| |||||||||||||||||    
T  35918035 aaagttccttttcatatttcttagcagttccttttccttttcatttttatagatttaa-caaccttgcagttaggatcagtttcttggtgtatgcttact 35917937  T
Q  259 aagtgtttcagatgataattaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    |||||||    ||| | ||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||    
T  35917936 aagtgtt----atggt-attaaagttgcatttttaaaattattgataatttaaatgattcaaatgataatttt 35917869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 487 - 597
Target Start/End: Complemental strand, 35917725 - 35917614
Alignment:
Q  487 cttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattcagtaacacaacctgataatatca-ttggtcagaaaataaagttaatagctc 585  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||| |     
T  35917725 cttttaacatgaatgtaatcaaatatgaaggttgagaaagaagaaattcagtaacacaacctgataatattatttggtaagaaaataaaattaatagttt 35917626  T
Q  586 aaattggtgtaa 597  Q
    ||||||||||||    
T  35917625 aaattggtgtaa 35917614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 445
Target Start/End: Complemental strand, 35917826 - 35917721
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttgctttcttccttt 438  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||  ||||||| ||||| |||||    
T  35917826 ttgtttctcatatattatattacttgaagttatttattctgattttttatttgcagaaatcgtta-actagattataacactactttgttttctcccttt 35917728  T
Q  439 gactttt 445  Q
    |||||||    
T  35917727 gactttt 35917721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 35918232 - 35918181
Alignment:
Q  8 taaaccacttccatttggattgaaatattgttgcttccaaaattgatatacc 59  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  35918232 taaaccacttccattttgattgaaaaattgttgcttccaaaattgatatacc 35918181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 517
Target Start/End: Original strand, 18557765 - 18557816
Alignment:
Q  466 aatttgcttattttagttgttcttttaacatgaatgtaatcaaatataaagg 517  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  18557765 aatttgcttattttagttcttcttttaacatgaatgtaatcagatatgaagg 18557816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 407
Target Start/End: Original strand, 18557401 - 18557456
Alignment:
Q  352 attacattacttgaagttatttattctgactttttatttgcaaaaatcattacact 407  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||| | ||||||    
T  18557401 attatattacttgaagctatttattctgattttttatttgcaaaaataactacact 18557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 9795551 - 9795606
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||||||| ||||||||||| |||||||||| | ||  |||||||||||||    
T  9795551 attaaagttgcatctttaaaattgtagataatttgactaatctagatgataatttt 9795606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 342 - 590
Target Start/End: Complemental strand, 42694726 - 42694477
Alignment:
Q  342 tttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttgctttcttcctttgac 441  Q
    |||||| ||||||| |||||||||| ||||||||| |||||||||||||||||| | |  ||||||  |||| ||| ||||| | ||||||  |||||||    
T  42694726 tttctcctatattatattacttgaaattatttattttgactttttatttgcaaatagc--tacactgaattacaacattactatactttctcgctttgac 42694629  T
Q  442 ttttcaaacatgtttaccagtttcaat--ttgcttattttagttgttcttttaacatgaatgtaatcaaatataaaggttgacaaagaagaaattcagta 539  Q
    |||  ||||| |||||    |||||||  ||  |||||||||||||||||||||| ||||||||||||||||   ||||||| | ||||  ||||||| |    
T  42694628 tttctaaacaagtttatttttttcaatatttttttattttagttgttcttttaacctgaatgtaatcaaatacggaggttgagagagaatgaattcagaa 42694529  T
Q  540 acacaacctgataatatca-ttggtcagaaaataaagttaatagctcaaatt 590  Q
    |||||| || || |||| | ||| | | |||||||||| ||||||| |||||    
T  42694528 acacaatctaatgatattatttgataaaaaaataaagtcaatagcttaaatt 42694477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 48260839 - 48260898
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaat 398  Q
    ||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  48260839 ttgtttctcctatattatactacttgaagttgtttattctgactttttatttgcaaaaat 48260898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 48260740 - 48260795
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    |||||||||| || ||||||||||| |||||||||| |||| | ||||||||||||    
T  48260740 attaaagttgtatctttaaaattgtagataatttgactgatccggatgataatttt 48260795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 45731486 - 45731407
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataact 418  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  45731486 ttgtttctcctatattatattatttgaagttatttattctgactttttatttacaaaaatcactacaccagattataact 45731407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 4172995 - 4173082
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||| ||||  ||| |||||| ||||||||    
T  4172995 ttgtttctcatatattatattacttgaagttgtttattctgacttgttatttgcgaaaatcactacaggagactataacattactttg 4173082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 30694652 - 30694566
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    ||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  30694652 ttgtttctcttatattatat-acttgaagttgtttattctgactttttatttgcaaaaatcactacagtagactataacattactttg 30694566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 4179322 - 4179409
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    |||||||||  |||||| ||||||||||||| | |||||| ||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  4179322 ttgtttctccaatattatattacttgaagttgtatattctaactttttatttgcaaaaatcactacagtagactataacattactttg 4179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 46589868 - 46589781
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    ||||||||| ||||||| ||||||||||  | |||||||||||||||||||||||||||||| || | |||| |||||| ||| ||||    
T  46589868 ttgtttctcttatattatattacttgaaactgtttattctgactttttatttgcaaaaatcactatagtagactataacattattttg 46589781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 4172896 - 4172951
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    |||||||||| || ||||||||||| |||||||||| |||||||||||||||||||    
T  4172896 attaaagttgtatctttaaaattgtagataatttgactgattcagatgataatttt 4172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 4179223 - 4179278
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    |||||||||| || ||||||||||| |||||||||| |||| ||||||||||||||    
T  4179223 attaaagttgtatctttaaaattgtagataatttgactgatccagatgataatttt 4179278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 46589968 - 46589913
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||||||| ||||||||||| |||||||||| ||||  |||||||||||||    
T  46589968 attaaagttgcatctttaaaattgtagataatttgactgatctagatgataatttt 46589913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 35166280 - 35166230
Alignment:
Q  462 tttcaatttgcttattttagttgttcttttaacatgaatgtaatcaaatat 512  Q
    |||||||||||||||||||  |||||||||||||  |||||||||||||||    
T  35166280 tttcaatttgcttattttaactgttcttttaacacaaatgtaatcaaatat 35166230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 45731585 - 45731531
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataattt 330  Q
    ||||||||||||| ||||||||||| |||||||||| | ||||| ||||||||||    
T  45731585 attaaagttgcatctttaaaattgttgataatttgactaattcaaatgataattt 45731531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 35166148 - 35166217
Alignment:
Q  363 tgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttgctttct 432  Q
    ||||||||| |||||| |||||||||||| ||||||||  ||| ||||||| ||| |||||||| |||||    
T  35166148 tgaagttatatattctaactttttatttgtaaaaatcaccacattagattacaacattactttgttttct 35166217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 30694751 - 30694696
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||||||| ||||||||||  |||||||||| ||||  |||||||||||||    
T  30694751 attaaagttgcatctttaaaattggagataatttgattgatctagatgataatttt 30694696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 2709 - 2640
Alignment:
Q  357 attacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||||| ||||||||    
T  2709 attacttgaagttatttattctgactttttatttacgaaaatcactacggtagattataacgttactttg 2640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 19403296 - 19403350
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataattt 330  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||    
T  19403296 attaaagttgcatctttaaaattgtagataatttgactgattcagatggtaattt 19403350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 19403395 - 19403455
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatca 400  Q
    ||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| |||||||||    
T  19403395 ttgtttctcctatattatattacatgaagtt-tttgttctgactttttatttacaaaaatca 19403455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 15107811 - 15107762
Alignment:
Q  278 taaagttgcatttttaaaattgtcgataatttgaatgattcagatgataa 327  Q
    ||||||||||| ||||||||||| |||||||||| ||||  |||||||||    
T  15107811 taaagttgcatctttaaaattgtagataatttgactgatctagatgataa 15107762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 18617 - 18577
Alignment:
Q  357 attacttgaagttatttattctgactttttatttgcaaaaa 397  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  18617 attacttgaagttatttattcttactttttatttgcaaaaa 18577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 18738 - 18686
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataat 328  Q
    ||||||||||||| ||||||||||| |||||||| | |||| |||||||||||    
T  18738 attaaagttgcatctttaaaattgttgataatttaactgatccagatgataat 18686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 8192042 - 8192002
Alignment:
Q  357 attacttgaagttatttattctgactttttatttgcaaaaa 397  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  8192042 attacttgaagttatttattcttactttttatttgcaaaaa 8192002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 54421024 - 54421079
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||||||| ||||||||||| || |||| || |||||||||||||||||||    
T  54421024 attaaagttgcatctttaaaattgtagacaattcgactgattcagatgataatttt 54421079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 54421106 - 54421164
Alignment:
Q  351 tattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactaga 410  Q
    ||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  54421106 tattatattacatgaagtt-tttgttctgactttttatttgcaaaaatcattacattaga 54421164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 8192163 - 8192111
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataat 328  Q
    ||||||||||||| ||||||||||| |||||||| | |||| |||||||||||    
T  8192163 attaaagttgcatctttaaaattgttgataatttaactgatccagatgataat 8192111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 60742 - 60828
Alignment:
Q  339 ttgtttctcatatattacattacttgaagttatttattctgactttttatttgcaaaaatcattacactagattataactttactttg 426  Q
    ||||||||| ||||||| ||||| ||||||| ||| |||| ||||||||||||||||||||| |||  || | |||||| ||||||||    
T  60742 ttgtttctcctatattatattacatgaagtt-tttgttcttactttttatttgcaaaaatcactactgtaaactataacattactttg 60828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 11140975 - 11141030
Alignment:
Q  276 attaaagttgcatttttaaaattgtcgataatttgaatgattcagatgataatttt 331  Q
    ||||||||||||| ||||||||||| |||||||| | |||| || |||||||||||    
T  11140975 attaaagttgcatctttaaaattgtagataattttactgatccaaatgataatttt 11141030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 11141082 - 11141131
Alignment:
Q  378 tgactttttatttgcaaaaatcattaca-ctagattataactttactttg 426  Q
    ||||||||||||||||||||||||||||  |||| |||||| ||||||||    
T  11141082 tgactttttatttgcaaaaatcattacaggtagactataacattactttg 11141131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University