View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4573-Insertion-6 (Length: 515)
Name: NF4573-Insertion-6
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4573-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 52180143 - 52179640
Alignment:
| Q |
12 |
gaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatggtgtggttcgggttcgtttccaaagccaacgagtgt |
111 |
Q |
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| T |
52180143 |
gaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatggtgtggttcgggttcgtttccaaagccaacgagtgt |
52180044 |
T |
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| Q |
112 |
cccgaacctcagcttcagcagagaaaaacatgccgaaaaatattgttagggagatcaatgacatggagagattatgaattgctgggaatggacctaaagg |
211 |
Q |
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| T |
52180043 |
cccgaacctcagcttcagcagagaaaaacatgccgaaaaatattgttagggagattaatgacatggagagactatgaattgctggtaatggacctaaagg |
52179944 |
T |
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| Q |
212 |
tacagggcgcagtctccgacatagtttaaggatgacgtggatagttaccgtgatggagatgtaaaagaatatggcggagatgagaaaccaccatgtggct |
311 |
Q |
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| T |
52179943 |
tacagggcgcagtctccgacatagtttaaggatgacgtggatagttaccgtgatggagatgtaaaagaatatggcggagatgagaaaccaccatgtggct |
52179844 |
T |
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| Q |
312 |
ccccatgatagggcaggactccaccggaatgaaacaattgatgggtgatctagtagccaatagttaagattctcctttgtaaactcgagcattgaatgtg |
411 |
Q |
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| T |
52179843 |
ccccatgatagggcaggactccaccggaatgaaacaattgatgggtgatctagtagccaatagttaagattctcctttgtaaactcgagcattgaatatg |
52179744 |
T |
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| Q |
412 |
tttgtgacattgtgtaattttcttggtgttgtactattgtaacgannnnnnnnnggaagttgctaagatgattatataagagtggaatttggattataaa |
511 |
Q |
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| T |
52179743 |
tttgtgacattgtgtaattttcttggtgttgtactattgtaacgaattttttttggaagttgctaagatgattatataagagtggaatttggattataaa |
52179644 |
T |
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| Q |
512 |
ttgg |
515 |
Q |
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| T |
52179643 |
ttgg |
52179640 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 6665252 - 6665178
Alignment:
| Q |
9 |
taagaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatggtgtggtt |
83 |
Q |
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|||||||| |||||||||||||| |||||||| || || | ||||||||| || |||||||| || || |||||| |
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| T |
6665252 |
taagaccagaagaaaacacgaccagatggacgcataccaagtgggaaacaaaggaaccattcaaaaggggtggtt |
6665178 |
T |
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