View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4573-Insertion-7 (Length: 507)

Name: NF4573-Insertion-7
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4573-Insertion-7
NF4573-Insertion-7
[»] chr1 (1 HSPs)
chr1 (28-507)||(31402841-31403317)


Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 28 - 507
Target Start/End: Complemental strand, 31403317 - 31402841
Alignment:
Q  28 atcaagtgaaattcataaatttcatactttgaaaatgagtcacataaaatgttgaaaaccatatgagtttcattaaataagagaataagtgttagagata 127  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||  ||||||||||||||    
T  31403317 atcaagtgaaattcataaatttcatactttgaaaatgggtcacataaaatgttgaaaaccacatgagtttcatcacataagagagcaagtgttagagata 31403218  T
Q  128 attttaagaagagattattgttaacatttctttttgtcaataatactcatatatttagggaaattcagttcgaacacttggttcaagttacattcaatgc 227  Q
     |||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  31403217 gttttaaaaagagattatcgttaacatttttttttgtcagtaatactcatatatttaagcaaattcagttcgaacacttggttcaagttacattcaatgc 31403118  T
Q  228 cataaaatgataatacttctcatgaaaaattcctagtccaatattattannnnnnngaaaggaattcctagtccaatattattctcacataatttccaat 327  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||    
T  31403117 cataaaatgata---cttctcatgaaaaattcctagtccaatattattatttttttgaaaggaattcctagtccaatattattctcacatgatttccaat 31403021  T
Q  328 taactctaaatatccttaacaagtataatttgatgtgcatgcacataaaactatttctactcataatttcaagaataaggctaagtaaatcaatatctta 427  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31403020 taactctaaatatccttaacatatataatttgatgtgcatgcgcataaaactatttctactcataatttcaagaataaggctaagtaaatcaatatctta 31402921  T
Q  428 ctagaaacccacttcattgtagcttccacttaatgccaaaatccccaaatcactgaatctccaataatcttatatgttgt 507  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31402920 ctagaaacccacctcattgtagcttccacttaatgccaaaatccccaaatcactgaatctccaaaaatcttatatgttgt 31402841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University