View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4573-Insertion-8 (Length: 463)

Name: NF4573-Insertion-8
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4573-Insertion-8
NF4573-Insertion-8
[»] chr6 (14 HSPs)
chr6 (5-463)||(16987822-16988280)
chr6 (62-459)||(16838103-16838509)
chr6 (8-459)||(17069877-17070334)
chr6 (8-435)||(16658380-16658813)
chr6 (8-435)||(16867362-16867795)
chr6 (62-459)||(16797591-16797997)
chr6 (8-463)||(18872513-18872974)
chr6 (28-419)||(16781496-16781890)
chr6 (146-463)||(18793950-18794273)
chr6 (8-393)||(18805589-18805980)
chr6 (62-463)||(18870036-18870443)
chr6 (28-418)||(16788356-16788752)
chr6 (252-463)||(18587031-18587251)
chr6 (11-202)||(16844207-16844398)
[»] scaffold0133 (2 HSPs)
scaffold0133 (5-418)||(13217-13639)
scaffold0133 (8-463)||(8878-9336)
[»] scaffold0144 (1 HSPs)
scaffold0144 (8-463)||(37858-38319)
[»] chr3 (2 HSPs)
chr3 (28-435)||(7052617-7053030)
chr3 (28-463)||(38938685-38939123)
[»] scaffold0511 (1 HSPs)
scaffold0511 (8-463)||(9730-10191)
[»] scaffold0256 (1 HSPs)
scaffold0256 (28-463)||(9541-9979)
[»] scaffold0230 (1 HSPs)
scaffold0230 (28-463)||(5070-5511)
[»] chr8 (1 HSPs)
chr8 (28-349)||(13378488-13378803)
[»] chr5 (1 HSPs)
chr5 (110-150)||(30712388-30712428)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 463
Target Start/End: Original strand, 16987822 - 16988280
Alignment:
Q  5 acactttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 104  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  16987822 acactttcatcattgaagaccatttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagagagtttttcactgtcactagcat 16987921  T
Q  105 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcc 204  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||  | |||| |||||||||||||||||||||||||    
T  16987922 gtcttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttctgtgatagtagaaatagtttggcgccattcatcatctcc 16988021  T
Q  205 tcgttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttc 304  Q
    |||||| ||||||||  ||| ||||||||||||||||||||| | | ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  16988022 tcgttgatgctcctccatgactcccacttgttgaaatccaaacttgatcctttcttcagcaatatcatcaatctttttagcaactttcttcatcctcttc 16988121  T
Q  305 ccaatattacgacgagccaaaatcttcataggatggaaacaagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagta 404  Q
    ||||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988122 ccaatgttgcgatgagccaaaatcttcataggatggaaactagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagta 16988221  T
Q  405 cataagcaacatcacccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    |||||||| |||||  || ||||||||||||||||||||| ||||||||||||||||||    
T  16988222 cataagcagcatcagacagtttctgcagccattgtttcacaacattgcttgttatttgc 16988280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 62 - 459
Target Start/End: Original strand, 16838103 - 16838509
Alignment:
Q  62 ccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcg 161  Q
    ||||||||||||||||||| |||||||||||| | ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||| ||| |    
T  16838103 ccaacaatggaatagacagagagttcttcactgttactagcatgccctataagaaactctacaatctgctctttatctttgtctcttccatatacttttg 16838202  T
Q  162 gttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttcttt 261  Q
    |||| ||||  |||||||||||| ||  |||||||||||||||||||||||||||||| |||| |||||||  |||||||||||| |  ||||||||||     
T  16838203 gttcggtgacagcagaagtagttaggatccattcatcatctcctcgttggtgctcctccgtgactcccactgattgaaatccaaactttttcctttcttc 16838302  T
Q  262 agcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaatcttcataggatggaaa---------caagtgttg 352  Q
    ||||||| |||||||| |||||||||| |||||||||||||| ||||| || |||||||||||||||||||| |||||||||         ||  |||||    
T  16838303 agcaatatcatcaatccttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttg 16838402  T
Q  353 tctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgc 452  Q
     || ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  16838403 ccttcatgtgcttttgaagttattgaacattcatccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacattgc 16838502  T
Q  453 ttgttat 459  Q
    |||||||    
T  16838503 ttgttat 16838509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 17069877 - 17070334
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||| | ||  ||||||| |||| ||||||||| | ||| ||    ||||||||||||||||||| |||||||||||| ||||||||||       
T  17069877 ctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaatagacagagagttcttcactgtcactagcat--- 17069973  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  |||||| ||||||||  |  |||||||||||||||    
T  17069974 ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtgatagcagaaatagtttggatctgttcatcatctcctcg 17070073  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    |||||||||||| |||| ||||||  ||||||||||| | ||| ||||||||||||||||| | |||||| |||||||||| |||||||||||||| |||    
T  17070074 ttggtgctcctccgtgactcccaccggttgaaatccatactcgatcctttctttagcaatatcgtcaatccttttagcaacctccttcatcctctttcca 17070173  T
Q  308 atattacgacgagccaaaatcttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    || || ||| |||||||||||||||| |||||||||         ||  ||||| || ||||||||||||| |||||||| |||||||||||||||||||    
T  17070174 atgttgcgatgagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaacattcatccaatatatcat 17070273  T
Q  399 caagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgcttgttat 459  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  17070274 caagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttat 17070334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 16658380 - 16658813
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||||| ||  ||||||| |||| ||||||||| | ||| ||    |||||||||||| |||||| |||||||||||| || |||||||       
T  16658380 ctttcatcattgaagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat--- 16658476  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||  | |||| ||||||||||||||||||||||||||||    
T  16658477 ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcg 16658576  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    ||| ||||||||||||| ||||||  ||||||||||||| | | ||||||||| ||||||| |||||||| |||||||||| |||||||||||||| |||    
T  16658577 ttgctgctcctctgtgactcccaccagttgaaatccaaacttgatcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctttcca 16658676  T
Q  308 atattacgacgagccaaaatcttcataggatggaaacaag---------tgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    || ||||||||||||||||||||||||||||| |||| ||         ||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  16658677 atgttacgacgagccaaaatcttcataggatgaaaactagtgatgcacttgttgcctccatgtgcttttgaagttattgaacattcatccaatatatcat 16658776  T
Q  399 caagtacataagcaacatcacccaatttctgcagcca 435  Q
    |||||||||||||| | ||||||| ||| ||||||||    
T  16658777 caagtacataagcagcgtcacccagtttttgcagcca 16658813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 435
Target Start/End: Complemental strand, 16867795 - 16867362
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||||| ||   |||||| |||| ||||||||| | ||| ||    |||||||||||| |||||| |||||||||||| || |||||||       
T  16867795 ctttcatcattgaagaccacttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacagagagttcttcactgtcgctagcat--- 16867699  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |    |||| ||||||||||||||||||||||||||||    
T  16867698 ttagaagaaactctacaatctgctctttatctttgtctcttccatatactttcggttcggtaacaatagaaatagtttggcgccattcatcatctcctcg 16867599  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    ||||||||||||||||| ||||||| ||||||||||||| | | ||||||||| ||||||| |||||||| |||||||||| |||||||||||||| |||    
T  16867598 ttggtgctcctctgtgactcccactagttgaaatccaaacttgatcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctttcca 16867499  T
Q  308 atattacgacgagccaaaatcttcataggatggaaacaag---------tgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    || || ||||||||||||||||||||||||||||||| ||         ||||| ||||||| |||||||| |||||||| |||||||||||||||||||    
T  16867498 atgttgcgacgagccaaaatcttcataggatggaaactagtgatgcacttgttgcctccatgcgcttttgaagttattgaacattcatccaatatatcat 16867399  T
Q  399 caagtacataagcaacatcacccaatttctgcagcca 435  Q
    |||||||||||||| | ||||||| ||| ||||||||    
T  16867398 caagtacataagcagcgtcacccagtttttgcagcca 16867362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 62 - 459
Target Start/End: Original strand, 16797591 - 16797997
Alignment:
Q  62 ccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcg 161  Q
    ||||||||||||||||||| ||||||||||||   ||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||| ||| |    
T  16797591 ccaacaatggaatagacagagagttcttcactggtactagcatgccctagaagaaactctacaatctgttctttatctttgtctcttccatatacttttg 16797690  T
Q  162 gttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttcttt 261  Q
    |||| ||||  |||||||||||| ||  |||||||||||||||||||||||||||||| |||| |||||||  |||||||||||| |  ||||||||||     
T  16797691 gttcggtgacagcagaagtagttaggatccattcatcatctcctcgttggtgctcctccgtgactcccactgattgaaatccaaactttttcctttcttc 16797790  T
Q  262 agcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaatcttcataggatggaaa---------caagtgttg 352  Q
    ||||||| |||||||| |||||||||| |||||||||||||| ||||| || |||||||||||||| ||||| ||||| |||         ||  |||||    
T  16797791 agcaatatcatcaatccttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaattttcattggatgaaaacgggtgatgcacttgttg 16797890  T
Q  353 tctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgc 452  Q
     || ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||    
T  16797891 ccttcatgtgcttttgaagttattgaacattcatccaatatatcatcaagtacataagcagcatcacccaatttctgcagccatttttgcacaacatcgc 16797990  T
Q  453 ttgttat 459  Q
    |||||||    
T  16797991 ttgttat 16797997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 8 - 463
Target Start/End: Complemental strand, 18872974 - 18872513
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||||| |||||||||||| ||   |||||| |    
T  18872974 ctttcatcattgaagaccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgac 18872875  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    ||||||||||||| ||||  | |||| | ||    ||||||||||||| |||||||||||||| | |||||  |||||||||||||| ||||||||||||    
T  18872874 ttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgatgacagaaaaagtttggcgccatttatcatctcctcg 18872775  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    |||| | |||||  ||| | || |||||   |||||||| | | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||    
T  18872774 ttggcgatcctccatgactaccgcttgt---aatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttcca 18872678  T
Q  308 atattacgacgagccaaaatcttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    ||||  |||||||||||||||||| |||||||||||         ||  |||||||||||||||||||||| |||||||  || ||||||||||||||||    
T  18872677 atatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcat 18872578  T
Q  399 caagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    |||| ||||| |||||||||  ||  ||||||||||| | |||||| |||  |||||||| ||||    
T  18872577 caagaacataggcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttagttgc 18872513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 419
Target Start/End: Original strand, 16781496 - 16781890
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||| |||||||| |  |||||||| || |||||| |||| |||||     
T  16781496 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactattgctagcatgcctcagaagatactcaacaatt 16781595  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    |  ||||||||| ||||||||||||||| ||| | |||||||| | |||| |||||||| ||||| || |||||| || |||||||||||    |||  |    
T  16781596 tgttctttatctctgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccactcttcatcttctggttggtgctcc---atgaccc 16781692  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    ||||    || ||||| || |   ||||||||| ||||||| |||| |||| ||||||||  |||||||||||||| ||||| || ||||||||||||||    
T  16781693 ccac---ctgcaatccgaacttcatcctttcttcagcaatatcatcgatctctttagcaatctccttcatcctctttccaatgttgcgacgagccaaaat 16781789  T
Q  328 cttcataggatggaaacaag---------tgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatca 418  Q
    ||||||||||||||||| ||         ||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||| |||||    
T  16781790 cttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattgaacattcgtccaatatatcatcaagcacataagcagcatca 16781889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 146 - 463
Target Start/End: Complemental strand, 18794273 - 18793950
Alignment:
Q  146 cttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtcccacttgttgaaatccaa 245  Q
    |||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||| | |||||  ||| | || ||||    |||||||    
T  18794273 cttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcgttggcgatcctccatgactaccgcttgc---aatccaa 18794177  T
Q  246 aatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaatcttcataggatggaaa-- 343  Q
    | | | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||||||| ||||||| |||      
T  18794176 acttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttccaatattcctacgagccaaaatcttcttaggatgtaaacg 18794077  T
Q  344 -------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatcacccaatttctgcagccat 436  Q
           ||  |||||||||||||||||||||| |||||||  || |||||||||||||||||||| ||||| |||||||||   |  |||||||||||     
T  18794076 ggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcatcaagaacataggcaacatcagttagcttctgcagccaa 18793977  T
Q  437 tgtttcacgacattgcttgttatttgc 463  Q
    | |||||| |||  |||||||||||||    
T  18793976 tctttcacaacacggcttgttatttgc 18793950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 18805980 - 18805589
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||||| |||||||||||| ||   |||||| |    
T  18805980 ctttcatcattgaataccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgac 18805881  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    ||||||||||||| ||||  | |||| | ||    ||||||||||||| |||||||||||||| | | ||| ||||||||||||||| ||||||||||||    
T  18805880 ttagaagaaactcaacaacttgctctctgtcacgatctcttccatatactttcggttcagtgatgactgaattagtttggcgccatttatcatctcctcg 18805781  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    |||| | |||||  ||| | || ||||    |||||||| | | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||    
T  18805780 ttggcgatcctccatgactaccgcttgc---aatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttcca 18805684  T
Q  308 atattacgacgagccaaaatcttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatat 393  Q
    ||||  |||||||||||||||||| |||||||||||         ||  |||||||||||||||||||||| |||||||  || |||||||||||    
T  18805683 atatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatat 18805589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 62 - 463
Target Start/End: Complemental strand, 18870443 - 18870036
Alignment:
Q  62 ccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcg 161  Q
    |||||||||||||||| || |||||||||||| |||  |||||| ||||| |||||||| | ||  |||||| ||||    ||||||||||| | ||| |    
T  18870443 ccaacaatggaatagaaagagagttcttcactgtcaagagcatgacttagcagaaactcaaaaactttctctctatcacgatctcttccataaacttttg 18870344  T
Q  162 gttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttcttt 261  Q
    ||||||||| | ||||||||||||||||   ||||||| ||||||||||| | |||||  ||| | ||||||||   ||||| || | | |||||||||     
T  18870343 gttcagtgacgacagaagtagtttggcgattttcatcaactcctcgttggcgatcctccatgactaccacttgt---aatcctaatttgatcctttcttc 18870247  T
Q  262 agcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaatcttcataggatggaaa---------caagtgttg 352  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||  | ||||||||||||| || |||||||||||         ||  |||||    
T  18870246 agcaataacatcaatctttttagcaacctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaactggtgatccacttgttg 18870147  T
Q  353 tctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgc 452  Q
    |||||||||||||||||  ||||||  || |||||||||||||||||||| |||||||||||||||  ||  ||||||||||| | |||||| |||  ||    
T  18870146 tctccatgtgcttttgattttattgtacaatcatccaatatatcatcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggc 18870047  T
Q  453 ttgttatttgc 463  Q
    | |||||||||    
T  18870046 tcgttatttgc 18870036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 28 - 418
Target Start/End: Original strand, 16788356 - 16788752
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||||||| |||||||||  | ||| ||| |||  ||||| |||||| |||||||    
T  16788356 ttgagcaagtgttgtttttccatattcacctaggccaacaatggaatagacagagagttcttctttgtcagtagtatgctttagaggaaactttacaatc 16788455  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    | |||||||| | |||  |||||||||| |   ||||| |||| | ||||||||||||||||||| |||||| | ||||||||  |||| ||||| | ||    
T  16788456 tgctctttatatatgtaccttccatatactacaggttcggtgacgacagaagtagtttggcgccactcatcagcacctcgttgacgctcttctgttactc 16788555  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    ||||   ||| |||||| | |   |||| |||||||||||| | |||||||||||||||||  ||||||||||||| ||||  | |||  ||||||||||    
T  16788556 ccac---ttgcaatccatacttcatcctgtctttagcaataacgtcaatctttttagcaaccgccttcatcctctttccaacgtcacgctgagccaaaat 16788652  T
Q  328 cttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatca 418  Q
    |||| ||||| |||||         ||  |||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||| |||| |||| |||||    
T  16788653 cttcttaggaaggaaacgggtgatgcacttgttgtctccatgtgcttttgatgttattgaacattcgtccaataaatcatcaagaacatgagcagcatca 16788752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 252 - 463
Target Start/End: Complemental strand, 18587251 - 18587031
Alignment:
Q  252 tcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaatcttcataggatggaaa-------- 343  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||  | ||||||||||||| || |||||||||||            
T  18587251 tcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacgggtgat 18587152  T
Q  344 -caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatcacccaatttctgcagccattgtttc 442  Q
     ||  ||||||||||||||||||||||  ||||||  || |||||||||||||| ||||| |||||||||||||||  ||  ||||||||||| | ||||    
T  18587151 ccacttgttgtctccatgtgcttttgattttattgtacaatcatccaatatatcgtcaagaacataagcaacatcagtcagcttctgcagccaatctttc 18587052  T
Q  443 acgacattgcttgttatttgc 463  Q
    || |||  |||||||||||||    
T  18587051 acaacacggcttgttatttgc 18587031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 16844207 - 16844398
Alignment:
Q  11 tcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtctta 110  Q
    ||||||||||| ||   ||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||| ||||  | ||| ||||||| ||||    
T  16844207 tcatcattgaagaccagttgagcaagtgctgtctttccatatccaccatgaccaacaatggaatagacagagagtccttccttgtcaatagcatgcctta 16844306  T
Q  111 gaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatct 202  Q
    |||||||||| |||| ||| || ||||| |  | |||||||   | ||  ||||| || | |  ||||||||||||||||||||||||||||    
T  16844307 gaagaaactcaacaaccttttccttatcctcatttcttccaagaatttggggttcggtaatgaaagaagtagtttggcgccattcatcatct 16844398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 13217 - 13639
Alignment:
Q  5 acactttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcat 104  Q
    ||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  13217 acactttcatcattgaagaccatttgagcaagtgttgtttttccatatccaccgtggccaacaatggaatagacagagagttcttcactctcactggcgt 13316  T
Q  105 gtcttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcc 204  Q
    | ||||| ||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||     
T  13317 gccttagcagaaactctacaatctgttctttatctttgtctcttccatatactttcggttcggtgacagcagaagtagtttggcgccattcatcatctcg 13416  T
Q  205 tcgttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttc 304  Q
    ||||||| ||||||| |||| | | | |||||| ||||| || |   ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||     
T  13417 tcgttggcgctcctccgtgactgcaaattgttgtaatccgaacttcatcctttcttcagcaatatcatcgatctttttagcaacctccttcatcctcttt 13516  T
Q  305 ccaatattacgacgagccaaaatcttcataggatggaaacaag---------tgttgtctccatgtgcttttgaggttattgagcattcatccaatatat 395  Q
    ||||| || ||||||||||||||||||||||||||||||| ||         ||||||| ||||||||| || |||||||||| ||||||||||||||||    
T  13517 ccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgctcttaaggttattgaacattcatccaatatat 13616  T
Q  396 catcaagtacataagcaacatca 418  Q
    ||||||  ||||||||| |||||    
T  13617 catcaatcacataagcagcatca 13639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 8878 - 9336
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| || |    
T  8878 ctttcatcattgaagactgtttgagcaagtgttgtttttccatatccaccgtggccaacaatagaatagacagagagttcttcactgtcaccagcgtgcc 8977  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
     |||||||||||||||||| | |||||||||||||||||||||||||| ||| | |||||||| | |||| |||||||| ||||   | |||||| || |    
T  8978 gtagaagaaactctacaatatgctctttatctttgtctcttccatatactttggattcagtgatgacagaggtagtttgccgccgcccttcatcttctgg 9077  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    |||| ||||     |||  ||||| |||   ||||| || |   ||||||||| ||||||| | || |||| ||||||||  |||||||||||||| |||    
T  9078 ttggcgctcga---tgacccccacatgt---aatccgaacttcatcctttcttcagcaatatcgtcgatctctttagcaatctccttcatcctctttcca 9171  T
Q  308 atattacgacgagccaaaatcttcataggatggaaacaagtg---------ttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    || || |||||| |||||||||||||||||||||||| ||||         ||||  |||||||||||| |||||||||| |||||||||||||||||||    
T  9172 atgttgcgacgaaccaaaatcttcataggatggaaacgagtgatccgcttgttgttaccatgtgcttttaaggttattgaacattcatccaatatatcat 9271  T
Q  399 caagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    |||| ||||||||| |||||| || || ||| ||||| | ||| ||  ||| | |||||||||||    
T  9272 caagcacataagcagcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgc 9336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 37858 - 38319
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||| | ||  ||||||| |||| ||||||||| | ||| ||    |||||||||||| |||||  |||||||||||| || || ||||       
T  37858 ctttcatcattgtagaccatttgagcgagtgttgtttttccttgtccgccaacaccaacaatggaacagacaaagagttcttcactttcgctggcat--- 37954  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||  | |||| ||||||||||||||||||||||||||||    
T  37955 ttagaagaaactctacaatctgttctttatctttgtctcttccatatactttcggttcggtgacagtagaaatagtttggcgccattcatcatctcctcg 38054  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    ||| |||||||| |||| ||||||| ||||||||||||| | ||||||||||| ||||||| |||||||| |||||||||| |||||||||||||| |||    
T  38055 ttgatgctcctccgtgactcccactcgttgaaatccaaatttgttcctttcttcagcaatatcatcaatccttttagcaacctccttcatcctctttcca 38154  T
Q  308 atattacgacgagccaaaatcttcataggatggaaacaag---------tgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    || || |||| |||||||||||||| ||||||||||| ||         ||| |||||| |||| |||| |||||||||| |||||||||||||||||||    
T  38155 atgttgcgacaagccaaaatcttcacaggatggaaactagtgatgcacttgtcgtctccgtgtggttttaaggttattgaacattcatccaatatatcat 38254  T
Q  399 caagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    ||||||||||||||  |||||| | || ||| ||||| | ||||||| ||| | |||||||||||    
T  38255 caagtacataagcagaatcaccgagttgctgtagccactctttcacggcatcgtttgttatttgc 38319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 28 - 435
Target Start/End: Complemental strand, 7053030 - 7052617
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||| ||||||||||| || ||||||||||| ||||||    
T  7053030 ttgagcaagtgttgtttttccatatccactgtggccaacaatgggatagatagagagttcttcactgtcactagcatgcctcagaagaaactcgacaatc 7052931  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    ||||||||||||||||||||||||||||       |||||||| | |||||||||||||||||||||||||||||||||| ||  |||||||| ||| ||    
T  7052930 ttctctttatctttgtctcttccatataccacaacttcagtgatgacagaagtagtttggcgccattcatcatctcctcgctgacgctcctctatgactc 7052831  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    ||||||||   |||||||| | | ||||||||| ||||||| ||||||||||||||||||| || ||||||||||| ||||| | ||| |||||||||||    
T  7052830 ccacttgt---aatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatgtcacgccgagccaaaat 7052734  T
Q  328 cttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatca 418  Q
    |||| |||||||||||         ||  |||||||||||   | |||||| |||||||| ||||| ||||||||||||||||| |||| |||| |||||    
T  7052733 cttcttaggatggaaacgggtgatccacttgttgtctccacagggttttgatgttattgaacattcgtccaatatatcatcaagaacatgagcagcatca 7052634  T
Q  419 cccaatttctgcagcca 435  Q
     |||  |||||||||||    
T  7052633 gccagcttctgcagcca 7052617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 28 - 463
Target Start/End: Complemental strand, 38939123 - 38938685
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||||||||| ||| |||||||| |   ||||||| || |||||| |||| |||||     
T  38939123 ttgagcaagtgttgtttttccatatccacctagaccaacaatggaatagacagagagatcttcactgttgttagcatgcctcagaagatactcaacaatt 38939024  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    |  ||||||||||||||||||||||||| ||  | |||||||| | |||| |||||||  ||||| || |||||| || ||||| |||||    |||  |    
T  38939023 tgttctttatctttgtctcttccatatacttcggattcagtgatgacagaggtagttttccgccactcttcatcttctggttggcgctcca---tgaccc 38938927  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    ||||||||   ||||| || |   ||||||||| ||||||| |||| |||||||||||||| |||||||||||||| ||||| || ||||||||||||||    
T  38938926 ccacttgt---aatccgaacttcatcctttcttcagcaatatcatcgatctttttagcaacctccttcatcctctttccaatgttgcgacgagccaaaat 38938830  T
Q  328 cttcataggatggaaacaagtg---------ttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatca 418  Q
    ||||| ||||||||||| ||||         ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38938829 cttcagaggatggaaacgagtgatccacttgttgtcgccatgtgcttttaaggttattgaacattcatccaatatatcatcaagtacataagcaacatca 38938730  T
Q  419 cccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    | ||||||||||||||| | |||||| |||| |||||| ||||||    
T  38938729 cgcaatttctgcagccagtctttcacaacatggcttgtaatttgc 38938685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 9730 - 10191
Alignment:
Q  8 ctttcatcattgaaaactgtttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtc 107  Q
    |||||||||||||| ||   ||||||||||| ||||||||| |  |||||    ||||||||||||||||| | |||||||||||| ||   | |||| |    
T  9730 ctttcatcattgaacaccacttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacngagagttcttcactatccacaacatgac 9829  T
Q  108 ttagaagaaactctacaatcttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcg 207  Q
    ||||||||||||| ||||  | |||| | ||   |||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  9830 ttagaagaaactcaacaacttgctctctgtcacggtctcttccatatactttcggttcagtgacgactgaagtagtttggcgccattcatcatctcctcg 9929  T
Q  208 ttggtgctcctctgtgagtcccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttccca 307  Q
    |||| | |||||  ||| | || ||||    |||||||| | | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||    
T  9930 ttggcgatcctccatgactaccgcttgc---aatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttcca 10026  T
Q  308 atattacgacgagccaaaatcttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcat 398  Q
    ||||  | |||||||||||||||| ||||||| |||         ||  |||||||||||||||||||||| |||||||  || ||||||||||||||||    
T  10027 atatgccaacgagccaaaatcttcttaggatgaaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgtacaatcatccaatatatcat 10126  T
Q  399 caagtacataagcaacatcacccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    |||| ||||| |||||||||   |  ||||||||||| | |||||| |||  |||||||||||||    
T  10127 caagaacataggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgc 10191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 28 - 463
Target Start/End: Original strand, 9541 - 9979
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||| |||||||| |  |||||||| || |||||| |||| |||||     
T  9541 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagagatcttcactgttgctagcatgcctcagaagatactcaacaatt 9640  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    || ||||||||||||||||||||| ||| | | | |||||||| |   || |||||||| ||||| || |||||| || |||||||||||    |||  |    
T  9641 ttttctttatctttgtctcttccaaatactatggattcagtgatgaaggaggtagtttgccgccactcttcatcttctggttggtgctcca---tgaccc 9737  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    |||| |||   ||||| || |   ||||||||| ||||||| ||||||||| ||||||||  |||||||||||||| ||||| || ||||||||||||||    
T  9738 ccacctgt---aatccgaacttcatcctttcttcagcaatatcatcaatctctttagcaatctccttcatcctctttccaatgttgcgacgagccaaaat 9834  T
Q  328 cttcataggatggaaacaagtg---------ttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatca 418  Q
    ||||||||||||||||| ||||         ||||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||    
T  9835 cttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattgaacattcatccaatatatcatcaagcacataagcagcatca 9934  T
Q  419 cccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
    | || || ||| ||||| | ||| ||  ||| | |||||||||||    
T  9935 cgcagttgctgtagccactctttgacagcatcgtttgttatttgc 9979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 463
Target Start/End: Original strand, 5070 - 5511
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||| |  |||||    ||||||||||||||||||| |||||||||||| ||   |||||| |||||||||||||| ||||      
T  5070 ttgagcaagtgttgtttttccttgcccaccaacaccaacaatggaatagacagagagttcttcactatcgacagcatgacttagaagaaactcaacaact 5169  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    | |||| | ||    ||||||||||||| |||||||||||||| | |||||  |||||||||||||| |||||||||||||||| | || ||  ||| |     
T  5170 tgctctctgtcacgatctcttccatatactttcggttcagtgacgacagaaaaagtttggcgccatttatcatctcctcgttggcgatcttccatgacta 5269  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    || |||||   |||||||| | | ||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||  | ||||||||||||    
T  5270 ccgcttgt---aatccaaacttgatcctttcttcagcaataacatcaatctttttagcaacctccttcatcctctttccaatatccctacgagccaaaat 5366  T
Q  328 cttcataggatggaaa---------caagtgttgtctccatgtgcttttgaggttattgagcattcatccaatatatcatcaagtacataagcaacatca 418  Q
    | || |||||||||||         ||  ||||||||||||||||||||||  ||||||  || |||||||||||||| ||||| |||||||||||||||    
T  5367 catcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgtacaatcatccaatatatcgtcaagaacataagcaacatca 5466  T
Q  419 cccaatttctgcagccattgtttcacgacattgcttgttatttgc 463  Q
      ||  ||||||||||| | |||||| |||  |||||||||||||    
T  5467 gtcagcttctgcagccaatctttcacaacacggcttgttatttgc 5511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 28 - 349
Target Start/End: Original strand, 13378488 - 13378803
Alignment:
Q  28 ttgagcaagtgctgtttttccatatccaccgtggccaacaatggaatagacagcgagttcttcactctcactagcatgtcttagaagaaactctacaatc 127  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||  ||||| || | ||| ||||  ||||||||| |||| |||||     
T  13378488 ttgagcaagtgttgtttttccatatccacctaggccaacaatggaatagacagagatatcttctctgttacttgcatcccttagaagatactcaacaatt 13378587  T
Q  128 ttctctttatctttgtctcttccatatagtttcggttcagtgagggcagaagtagtttggcgccattcatcatctcctcgttggtgctcctctgtgagtc 227  Q
    |  ||||||||||||||||||||||||| ||| | || ||||| |  |||||||||||||||||| ||    ||| || || | ||||||    ||| ||    
T  13378588 tgttctttatctttgtctcttccatatactttggatttagtgatgatagaagtagtttggcgccactccatgtcttctggtagatgctcc---atgactc 13378684  T
Q  228 ccacttgttgaaatccaaaatcgttcctttctttagcaatagcatcaatctttttagcaacttccttcatcctcttcccaatattacgacgagccaaaat 327  Q
    |||| |||   |||||||| | | |||  |||| ||||||| ||||||||||||||||||| || ||||||||||| ||||||   || |||||||||||    
T  13378685 ccacatgt---aatccaaacttgatccggtcttcagcaataacatcaatctttttagcaacctctttcatcctctttccaatacctcggcgagccaaaat 13378781  T
Q  328 cttcataggatggaaacaagtg 349  Q
    |||| |||||||||||| ||||    
T  13378782 cttcttaggatggaaacgagtg 13378803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 30712428 - 30712388
Alignment:
Q  110 agaagaaactctacaatcttctctttatctttgtctcttcc 150  Q
    ||||||||||| |||||||| |||||||| |||||||||||    
T  30712428 agaagaaactcgacaatcttttctttatcattgtctcttcc 30712388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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