View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4573_high_3 (Length: 248)
Name: NF4573_high_3
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4573_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 53363126 - 53362898
Alignment:
| Q |
1 |
cacgcgccgcgcattcgcagcaaccaagaacaacaaaaacaacgcccccgaagacgcctacgccgccgaatccatcggtgacgatcccctcgccgcttcc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53363126 |
cacgcgccgcgcattcgccgcaaccaagaacaacaaaatcaacgcccccgaagacgcctacgccgccgaatccatcggtgacgatcccctcgccgcttcc |
53363027 |
T |
|
| Q |
101 |
agtggtcaagtcatcgtcggagtcgaaagccgttaccgcatcgtttatcgtttagttaacggaatctacgtccttggaataaccgtcgccgatcacgata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53363026 |
agtggtcaagtcatcgtcggagtcgaaagccgttaccgcatcgtttatcgtttagttaacggaatctacgtccttggaataaccgtcgccgatcacgata |
53362927 |
T |
|
| Q |
201 |
actccgtcaatgttttcgaatgcattcat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53362926 |
actccgtcaatgttttcgaatgcattcat |
53362898 |
T |
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