View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4573_low_1 (Length: 385)
Name: NF4573_low_1
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4573_low_1 |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 25873339 - 25872980
Alignment:
| Q |
19 |
cacgagaaacacaaatacaataatgataattttaatatgagtagtgctagcgatagtttctttgaaacttagtctttgttctgtcgcactacactgcatt |
118 |
Q |
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| T |
25873339 |
cacgagaaacataaatacaataatgataattttaatatgagtggtgctagcgatagtttctttgaaacttagtctttgttctgtcgcactacactgcatt |
25873240 |
T |
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| Q |
119 |
gcttgtgctctcatttgtgaaaccattttattattcttagaaaaaactt-aaaggttatcaacacccaaataaaaaccgagagaaagacaa--ttaaaac |
215 |
Q |
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| T |
25873239 |
gcttgtgctctcatttgtgaaaccattttattattcttagaattttttttaaaggttatcaacacccaaataaaaactgagagaaagacaaaattaaaac |
25873140 |
T |
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| Q |
216 |
cttcaaatttagttcaagaaaatagcaatagtttgattcgcatnnnnnnntgttctgatcgcatagaaaccaattcgattagtaaaggttcacagttcgg |
315 |
Q |
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| T |
25873139 |
cttcaaatttagttcaagaaaatagcaatagtttgattcgcataaaaaattgttctgatcacatagaaaccaattcgattagtaaaggttcacagttcgg |
25873040 |
T |
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| Q |
316 |
ttttgcaaagtaagatcagttcggatcgaaaatacagatccctgttcttaatgtcctttg |
375 |
Q |
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| T |
25873039 |
ttttgcaaagtaagatcagttcggatcgaaaatacagatccctgttcttaatgtcctttg |
25872980 |
T |
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Target: scaffold0429 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 12240 - 12304
Alignment:
| Q |
118 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
183 |
Q |
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| T |
12240 |
tgcttgtgttctcatttgtgaaaccatgttcttattcttagaaaaaacttaaa-gttatcaacacc |
12304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 52274372 - 52274308
Alignment:
| Q |
118 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
183 |
Q |
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| T |
52274372 |
tgcttgtgttctcatttgtgaaaccatgttcttattcttagaaaaaacttaaa-gttatcaacacc |
52274308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 16353292 - 16353357
Alignment:
| Q |
118 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
183 |
Q |
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| T |
16353292 |
tgcttgtgttctcatttgtgaaactatgttcttattcttagaaaaatcttaaaagttatcaacacc |
16353357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 11993927 - 11993991
Alignment:
| Q |
118 |
tgcttgtgctctcatttgtgaaaccattttattattcttagaaaaaacttaaaggttatcaacacc |
183 |
Q |
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| T |
11993927 |
tgcttgtgttctcatttgtggaaccatgttcttattcttagaaaaaacataaa-gttatcaacacc |
11993991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 16353591 - 16353683
Alignment:
| Q |
266 |
tgttctgatcgcatagaaaccaattcgattagtaaaggttcacagttcggttttgcaaagtaagatcagttcggatcgaaaatacagatccct |
358 |
Q |
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| T |
16353591 |
tgttctgttcgtatagaaaacaattcggttcgtaaaggttaacagtttcgttttgcaaggattgatcagttcggattcaaagtacagaaccct |
16353683 |
T |
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