View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4573_low_4 (Length: 326)
Name: NF4573_low_4
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4573_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 15619187 - 15618884
Alignment:
| Q |
19 |
aacatgccgcagatcctaatttatgtacatcctg-----tttttcgcactaaagtatgattatggtttgaatctttatagagcatgtattgtatggatga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15619187 |
aacatgccgcagatcctaatttatgtacatcctcatatatttttcgcactaaagtatgattatggtttgaatctttatagagcatgtattgtatggatga |
15619088 |
T |
|
| Q |
114 |
attattaaattaattccaactctttttttaaataattttctgcacacccnnnnnnnn-aattaaatatctttcaggcacaagcggggagaataatttttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15619087 |
attattaaattaattccaactctttttttaaataattttctgcacaccctttttttttaatcaagtatctttcaggcacaagcggggagaataatttttt |
15618988 |
T |
|
| Q |
213 |
gaatcttggggaactcaaatagcagcaaactcttggtaagagttttagcacttcacgccccatagtttgtctcactctcacctctcatgtgtttctagcc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15618987 |
gaatcttggggaactcaaatagcagcaaactcttgctaagagttttagcacttcacgccccatagtttgtctcactctcacctctcatgtgtttctagct |
15618888 |
T |
|
| Q |
313 |
tatg |
316 |
Q |
| |
|
|||| |
|
|
| T |
15618887 |
tatg |
15618884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 15683791 - 15683712
Alignment:
| Q |
86 |
ctttatagagcatgtattgtatggatgaattattaaattaattccaac---tctttttttaaataattttctgcacaccc |
162 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||||||||||| | |||||| |||||| ||||||||||||| |
|
|
| T |
15683791 |
ctttataatgcatgtcttgtatggatgaattagtaaattaattccaacttttattttttaaaataactttctgcacaccc |
15683712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 15683666 - 15683629
Alignment:
| Q |
95 |
gcatgtattgtatggatgaattattaaattaattccaa |
132 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
15683666 |
gcatgtcttgtatggatgaattagtaaattaattccaa |
15683629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 23285774 - 23285850
Alignment:
| Q |
54 |
ttttcgcactaaagtatgattatggtttgaatctttatagagcatgtattgtatggatgaattattaaattaattcca |
131 |
Q |
| |
|
||||| ||||||| ||||||||| ||| |||||||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
23285774 |
ttttcacactaaattatgattatagttataatctttatagagcatgt-ttgtcttgatgaattattaaattaattcca |
23285850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 16362120 - 16362185
Alignment:
| Q |
68 |
tatgattatggtttgaatctttatagagcatgtattgtatggatgaattattaaattaattccaac |
133 |
Q |
| |
|
||||||||| ||| |||||||||||| |||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
16362120 |
tatgattataattttaatctttatagatcatgatttatattgatgaattattaaattaattccaac |
16362185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University