View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4573_low_7 (Length: 238)
Name: NF4573_low_7
Description: NF4573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4573_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 52174703 - 52174914
Alignment:
| Q |
12 |
cacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52174703 |
cacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactaga |
52174802 |
T |
|
| Q |
112 |
aatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaaatgttagtgccctcaaggtggcg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52174803 |
aatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaaatgttaatgccctcaaggtggcg |
52174902 |
T |
|
| Q |
212 |
gaggtggttgat |
223 |
Q |
| |
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|||||||||||| |
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| T |
52174903 |
gaggtggttgat |
52174914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 31585239 - 31585087
Alignment:
| Q |
16 |
gatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatg |
115 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| || ||||| |
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| T |
31585239 |
gatgaataaagtaatagaaatgttgcaaggaccactttcatcagtgccatatcctccaaagcccgtcttattttctcttgaaaggccaccagtacaaatg |
31585140 |
T |
|
| Q |
116 |
tcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaa |
168 |
Q |
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| T |
31585139 |
tcacatatatcttcaaccgactgggatgagacaaattcaattacaatatcaaa |
31585087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 31608088 - 31607917
Alignment:
| Q |
17 |
atgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgt |
116 |
Q |
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|||||||||||||||||||||||| |||| || || ||||||||| |||||||||||||||| ||||||| || ||| |||| |||||||||| || ||| |
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| T |
31608088 |
atgaataaagtaatagaaatgttgcaaggaccgctgtcatcagtgtcatatcctccaaagccggtcttattttctccggaaaggccaccactacaattgt |
31607989 |
T |
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| Q |
117 |
cagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaa |
188 |
Q |
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|| | ||||||||||| |||| ||||||| ||||| ||||| ||||||||||| ||||| |||||||| |
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| T |
31607988 |
catatatgtcttcatctgatttatatgagacaaattcagttacagtgtcaaaataactgttctatctataaa |
31607917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 31618102 - 31617930
Alignment:
| Q |
16 |
gatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatg |
115 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||||| || |||||||||||||||| ||||||| || || |||| |||| |||| || || |
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| T |
31618102 |
gatgaataaagtaatagaaatgttgcaaggaccactttcatcggtatcatatcctccaaagcctgtcttatattcacccgaaaggccagaactacaagtg |
31618003 |
T |
|
| Q |
116 |
tcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaa |
188 |
Q |
| |
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||||| |||||||||||| ||||| | ||||| ||||| ||||| | |||||||||| ||| |||||||||| |
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| T |
31618002 |
tcagatatgtcttcatccgatttgtacgagacaaattcagttacagtatcaaaataattgttatttctataaa |
31617930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 31604498 - 31604382
Alignment:
| Q |
16 |
gatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatg |
115 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||| || | |||||||||||||||||||||||| || ||||||| ||||| | || || || |
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| T |
31604498 |
gatgaataaagtaatagaaatgttgcaaggaccactttcaacaatatcatatcctccaaagcccgtcttatattcacctgaaaggccacaattacaagtg |
31604399 |
T |
|
| Q |
116 |
tcagacatgtcttcatc |
132 |
Q |
| |
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||||||||||||||||| |
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| T |
31604398 |
tcagacatgtcttcatc |
31604382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 31614373 - 31614216
Alignment:
| Q |
16 |
gatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatg |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||| ||| ||||| || || ||| |||||||||| || || |
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| T |
31614373 |
gatgaataaagtaatagaaatgttgcaaggaccactttcatcggtgtcatatcctccaaatcccttcttacattcaccataaaggccaccactacaagtg |
31614274 |
T |
|
| Q |
116 |
tcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataat |
173 |
Q |
| |
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| ||| || ||||||||| ||||| | ||||| ||||| |||||| | |||||||||| |
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| T |
31614273 |
ttagatatttcttcatccgatttgtacgagacaaattcaattacagtatcaaaataat |
31614216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 31575829 - 31575686
Alignment:
| Q |
16 |
gatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatg |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||||||| ||||||| || |||||||| | |||| ||| ||||| |
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| T |
31575829 |
gatgaataaagtaatagaaatgttgcaaggaccactttcctcggtgtcatatcctccaaagcctgtcttattttctcctgaaaggacaccgctacaaatg |
31575730 |
T |
|
| Q |
116 |
tcagacatgtcttcatccaatttggatgagacgaattccattac |
159 |
Q |
| |
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| | || ||||||||| ||| | ||||||| ||||| ||||| |
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| T |
31575729 |
ccgcatatatcttcatccgattcgtatgagacaaattctattac |
31575686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 31594888 - 31594744
Alignment:
| Q |
17 |
atgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgt |
116 |
Q |
| |
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|||||||||||||| |||||| | |||| || |||||||| || ||| ||||||||| || ||||||| || |||| ||| |||||||||| || | | |
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| T |
31594888 |
atgaataaagtaattgaaatgctacaaggaccgctttcatcggtcacatttcctccaaaacctgtcttattttctcctaaaaggccaccactacaactct |
31594789 |
T |
|
| Q |
117 |
cagacatgtcttcatccaatttggatgagacgaattccattacaa |
161 |
Q |
| |
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|| | ||||||||||| ||| | | ||||| ||||| ||||||| |
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| T |
31594788 |
caaatatgtcttcatcagattggcaagagacaaattcaattacaa |
31594744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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